Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0896 ATGGATCAAGATTCAGCATCAAATGGAGCCCATGAGACAGTTTTAAATGTAAGCAAGGATGTCTCTAACACTACTGAAGTCTCAGACACCTCTTTCACTGTTTCTTTCTTGCAAAAGATAGTAGCTGAGGTGGTGGGAACATATTTTATGATATTTGCTGGTTGTGCTTCAGTGGTAGTGAACAAGAACAATGACAATGTGGTTACACTTCCTGGGATTTCAATTGTTTGGGGACTGGCTGTGATGGTGCTGGTTTACTCTGTTGGCCACATTTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCCACCAACAGAAGGTTTCCATGGAAGCAGGTACCTACTTATATAGCAGCTCAGGTTCTTGGATCCACACTTGCAACTGGAACTCTCAGGCTAATATTCAATGGCAAGCATAATCAGTTTACAGGAACACTCCCAGCTGGGTCTAACTTACAAGCTTTTGTGATTGAATTCATAATCACTTTTTACCTTATGTTCATCATATCTGGGGTGGCCACTGATAATCGAGCAATTGGTGAGTTGGCTGGGATTGCCGTGGGATCTACAGTGCTCTTGAATGTGATGTTTGCAGGGCCAATAACTGGAGCATCAATGAACCCAGCAAGAAGCATAGGCCCTGCCATTGTGCATGGTGAATACAGAGGAATATGGATATACTTGGTGTCTCCAATTATGGGGGCAGTGGCTGGTGCATGGGTCTACAATATCGTTCGCTATACGGACAAGCCATTGCGTGAGATCACAAAGAGTGCCTCTTTTCTCAAAGGAGTACCTCGTAGTGGTGGCTCCAACTGA 825 0.4448 MDQDSASNGAHETVLNVSKDVSNTTEVSDTSFTVSFLQKIVAEVVGTYFMIFAGCASVVVNKNNDNVVTLPGISIVWGLAVMVLVYSVGHISGAHFNPAVTIAFATNRRFPWKQVPTYIAAQVLGSTLATGTLRLIFNGKHNQFTGTLPAGSNLQAFVIEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAIVHGEYRGIWIYLVSPIMGAVAGAWVYNIVRYTDKPLREITKSASFLKGVPRSGGSN* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0896 274 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0896 274 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Lja4g0896 274 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Lja4g0896 274 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
Lja4g0896 274 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0896 274 Gene3D Glycerol uptake facilitator protein. 2 258 IPR023271 -
Lja4g0896 274 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0896 274 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Lja4g0896 274 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0896 274 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0896 274 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0896 274 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0896 274 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0896 274 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0896 Lja-Chr4 7499960 7502866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0896 25 270 Major Intrinsic Protein MIP AT5G37820 61.789 5.19e-109 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0896 K09874 - gmx:100794883 447.588