Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0894 ATGCTGACAAGGACCCTCTTTGCTTTCTCAATCATTTCATTGGGTTGCTTCACATGTCTGGAATATGCAGAATCCAAACTACCCCATCAAGAGGTGAATGCTCTTAAAGAAATCACCAGCACAATGGGTGTCAACTATTGGAAGTTTGATAGTGACTCTTGTGAAATTGAAATTGTGGGGTTAACACCAGAATCACCTGCTGGATCTGAAAGTAGCATTGATTGTGATTGCTCTTTTGAAAATGGTACCTTCTGCCATGTAGTAAGGATTATGCTCAAGGGGTACAACCTTCCGGGCATGCTTCCACCTCAACTGGTTAAGCTTCCTTACCTCAAAGAAGTTGATTTTGCTTTGAACTACCTAAATGGTGCAATTCCAAAGGAGTGGGCTTCAATGAACCTAACTTCAATCTCTCTACTTGTTAATCGTTTATCAGGGGAAATTCCAAAGGAGTTGGGAAATATTACCAGTCTAACATACCTGAACCTTGAAGCTAACCAATTTTCTGGTCTTGTTCCCTCTGAACTTGGAAGTCTACTTAACCTGCAAACTTTGATTTTATCATCTAATAAGTTGTCCGGGAATTTACCTGGCACATTTGCTCATTTACAGAATTTGATAGATTTTAGGATAAATGATAATAGTTTCAACGGAAAAATACCTAGCTTCATCCAGAATTGGAAATTACTTGAAAGACTAGAAATGCATGGAAGTGGACTCGAGGGGCCAATCCCATCAAATATATCTCTTTTGAGTAATTTATCTCAACTGAGGATTACTGACATAAAGGGTCCAAGCCAGGAATTTCCTATTTTAAGCAACATGACAGGAATGATAAGATTGATTTTGAGAAGTTGTAATATTACTGGAGAACTTCCTAGCTACTTCTGGACAATGAAGAATTTGGAAATGTTGGATCTCAGTTTCAATAAGTTGGTTGGGAGAATACCAGAAACTGTACATGTGGGGCATTTGAGATTTGTCTTCCTAACTGGCAACATGCTGAGTGGTAATGTACCTGACTCAATCTTGATGGATGGAAGCAATGTTGATCTTTCTTACAACAACTTTACGTGGCAAGGACCTGGACAACCTGCTTGCGGAGATTACCTGAATTTAAACCTAAACTTGTTCCGGAGCTCCTTAGGGATCAATGCATTGCAGGGGATTCTTCCATGTTCACAAACTTTCAACTGTCCTAGATATGCAACATGTTTGCACGTCAACTGTGGTGGAAAAGATATACACGTGAAGGAAAATGGTGAAAATATCCTCTATGTAGGAGATGGTGATGTGGTGGGTGGTGCTGCAAAATATTTTAATGATTATAAAAATTACTGGGGGTTTAGTAGCACCGGTGACTTCATGGATGATGGTGATTTCCAAAATACACGTTACACCAAGTCTTTGTCATCTTCAAATATCCCGGAGTTATACACAACAGCTCGTGTCTCTCCGATTTCACTGTCTTATTTTCACTATTGCTTGGAAAATGGGAAGTATACTGTAAATCTCCATTTTGCAGAAATTATATTTTCCAATGAGAAGATATATAGAAGTCTTGGAAAGCGCTTATTTGATATCTATATTCAGGAAAGATTAGTTTGGAAGGATTTTAATATTGAAGATGAAATACACGTTGCTCTAAAACCACGGACAATCTCAATATATAATGTCACTGTAACTGACAATATTTTGGAGATTCGATTCTACTGGGCTGGCAAGGGAACTACAAGAATTCCTGTTAGTGGAGTTTATGGTCCCCTCATATCAGGTTTCTCTATTGTTTCTGATGCTAAACCTTGTGCTGACCCAAAAAAGGGAAGGCGTAAAATAGTCATTGGAGTTGGCTTTGGAGTTTCAGCTCTATGTCTAGTCCTTATTATAGTAGGAATCTTTTGGAGGAGAGGCTACATCAAAGGAATAATTAGAAGAGAAAAAGGTATCAAAGGTCAAGATTTTCAGCAGGGAACGTTTACCTTAAAACAAATTAGAGATGCCACAGATGACTTCAGTCCTGATAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCGGATGGTACATGGGTCGCGGTCAAACAACTCTCATCAAAGTCCCGGCAGGGAAACCGTGAATTTTTAAATGAGATAGGCATGATATCTTGTGTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCACTGAAGGGGATCAATTGATCTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCCGAGCTTTATTCAGTTCAAAAGATCAGCTTAACCTAGATTGGCCAACAAGGCTCAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTCCATGAAGAATCAAGACTAAAGATTGTTCATCGAGATATCAAAGCCACTAATGTGTTGCTGGATGGGAACTTAAACCCTAAAATATCTGATTTTGGGTTGGCTAAGCTTGATGAAGAGGATAAAACCCATGTCACCACTAGAGTGGCTGGGACAATAGGATATATGGCACCGGAATATGCATTATGGGGTCACCTGTCTTATAAGGCTGATGTTTACAGTTTTGGAGTTGTGGTCTTGGAAATTGTTAGTGGAAAGAACAATAACAATTACATGCCAAGTGATAATTGTGTATGCCTTTTAGATAGGGCATATCATCTGCAACAGACTGAAAACTTGGTGAAATTGGTTGATGAAAGCTTGGGATCAAAGGTAAACCCAACTGAAGCACAAAATATGCTGAAAGTAGCTCTCCTGTGCACAAATACATCACCATCACTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTTGAAGGAAGAATAAGCATTCCAGATGTTGACCCAGAAACAAGTGTTTTCCGTGAAGATTTAAGGTTTAAAGCCATGAGGGACATCCGTCAACACAAGGAAAATCACAGTTTGAGCACAAGCCAAACAGACAATTCAACAGGGCTCACGCATAGCTTTCCCTCAACATCTGGCAATGACATGCATCAGATATCCTCAGAATCATGA 3027 0.3944 MLTRTLFAFSIISLGCFTCLEYAESKLPHQEVNALKEITSTMGVNYWKFDSDSCEIEIVGLTPESPAGSESSIDCDCSFENGTFCHVVRIMLKGYNLPGMLPPQLVKLPYLKEVDFALNYLNGAIPKEWASMNLTSISLLVNRLSGEIPKELGNITSLTYLNLEANQFSGLVPSELGSLLNLQTLILSSNKLSGNLPGTFAHLQNLIDFRINDNSFNGKIPSFIQNWKLLERLEMHGSGLEGPIPSNISLLSNLSQLRITDIKGPSQEFPILSNMTGMIRLILRSCNITGELPSYFWTMKNLEMLDLSFNKLVGRIPETVHVGHLRFVFLTGNMLSGNVPDSILMDGSNVDLSYNNFTWQGPGQPACGDYLNLNLNLFRSSLGINALQGILPCSQTFNCPRYATCLHVNCGGKDIHVKENGENILYVGDGDVVGGAAKYFNDYKNYWGFSSTGDFMDDGDFQNTRYTKSLSSSNIPELYTTARVSPISLSYFHYCLENGKYTVNLHFAEIIFSNEKIYRSLGKRLFDIYIQERLVWKDFNIEDEIHVALKPRTISIYNVTVTDNILEIRFYWAGKGTTRIPVSGVYGPLISGFSIVSDAKPCADPKKGRRKIVIGVGFGVSALCLVLIIVGIFWRRGYIKGIIRREKGIKGQDFQQGTFTLKQIRDATDDFSPDNKIGEGGFGPVYKGQLSDGTWVAVKQLSSKSRQGNREFLNEIGMISCVQHPNLVKLHGCCTEGDQLILVYEYMENNSLARALFSSKDQLNLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLAKLDEEDKTHVTTRVAGTIGYMAPEYALWGHLSYKADVYSFGVVVLEIVSGKNNNNYMPSDNCVCLLDRAYHLQQTENLVKLVDESLGSKVNPTEAQNMLKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVDPETSVFREDLRFKAMRDIRQHKENHSLSTSQTDNSTGLTHSFPSTSGNDMHQISSES* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0894 1008 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 993 - -
Lja4g0894 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Lja4g0894 1008 ProSiteProfiles Protein kinase domain profile. 671 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0894 1008 SMART serkin_6 671 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0894 1008 Pfam Protein tyrosine and serine/threonine kinase 674 941 IPR001245 GO:0004672|GO:0006468
Lja4g0894 1008 SMART LRR_typ_2 155 178 IPR003591 -
Lja4g0894 1008 SMART LRR_typ_2 179 202 IPR003591 -
Lja4g0894 1008 SMART LRR_typ_2 299 323 IPR003591 -
Lja4g0894 1008 Gene3D - 402 600 - -
Lja4g0894 1008 MobiDBLite consensus disorder prediction 978 1008 - -
Lja4g0894 1008 Gene3D Ribonuclease Inhibitor 30 190 IPR032675 -
Lja4g0894 1008 SUPERFAMILY Protein kinase-like (PK-like) 656 942 IPR011009 -
Lja4g0894 1008 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Lja4g0894 1008 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 68 993 - -
Lja4g0894 1008 Gene3D Transferase(Phosphotransferase) domain 1 747 950 - -
Lja4g0894 1008 Gene3D Phosphorylase Kinase; domain 1 642 746 - -
Lja4g0894 1008 Gene3D Ribonuclease Inhibitor 191 265 IPR032675 -
Lja4g0894 1008 Gene3D Ribonuclease Inhibitor 266 366 IPR032675 -
Lja4g0894 1008 SUPERFAMILY L domain-like 81 341 - -
Lja4g0894 1008 CDD STKc_IRAK 677 943 - -
Lja4g0894 1008 MobiDBLite consensus disorder prediction 972 1008 - -
Lja4g0894 1008 Pfam Malectin domain 405 592 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0894 Lja-Chr4 7484935 7493268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0894 6 836 Receptor kinase-like Gene Family AT1G29750 60.938 0.0 1038
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g0894 PK_Tyr_Ser-Thr 6.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0894 - - vra:106779815 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0894 4 7484935 7493268 Lja4g0894 4 7484935 7493268 ECH