Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0889 ATGAGTTCTCCAAACCAATCCATGTCAGCTAATAATTCTCCTCAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACAACCAATCGCCAAGTAACCTTCTGCAAACGCAGAAATGGGTTGCTTAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAAGTGGCTCTCATAGTCTTCTCAAACCGTGGCCGCCTCTATGAATATGCAAATAACAGTGTCAAAGCATCTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGAGGTGGATCCACTTCTGGGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGTGTCCAAATCAGTAACCTGCAGAATCACAACAGGCAAATGCTGGGTGAGGCTTTGAGCAACATGAATGCCAGGGATCTCAAAAACCTTGAGACAAAATTAGAAAAAGGAATTAGCAGAATTCGATCCAAGAAGAACGAGATGCTATTTGCAGAAATCGAGTATATGCAGAAAAGGGAGATAGACTTGCATAATAGCAATCAGCTTCTTAGAGCAAAGATAGCAGAAAGTGATGAGAGGAAGAACCATAACTTTAACATGTTGCCTGGAACCACAAACTTTGAATCTCTGCAGCAATCTCAGCAGCCCTTTGATTCTCGCGGTTTCTTCCAAGTGACTGGATTACAACCCAATAACAATCAGTGTGCAAGGCAAGACCAGATCTCACTTCAATTTGTTTGA 744 0.4274 MSSPNQSMSANNSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKACSDSSGGGSTSGANAQFYQQEAAKLRVQISNLQNHNRQMLGEALSNMNARDLKNLETKLEKGISRIRSKKNEMLFAEIEYMQKREIDLHNSNQLLRAKIAESDERKNHNFNMLPGTTNFESLQQSQQPFDSRGFFQVTGLQPNNNQCARQDQISLQFV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0889 247 PANTHER MADS BOX PROTEIN 12 241 - -
Lja4g0889 247 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Lja4g0889 247 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g0889 247 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
Lja4g0889 247 PANTHER AGAMOUSB 12 241 - -
Lja4g0889 247 Pfam K-box region 103 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g0889 247 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g0889 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Lja4g0889 247 CDD MADS_MEF2_like 19 88 IPR033896 GO:0000977|GO:0045944
Lja4g0889 247 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Lja4g0889 247 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Lja4g0889 247 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Lja4g0889 247 ProSiteProfiles K-box domain profile. 104 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g0889 247 Coils Coil 104 131 - -
Lja4g0889 247 Gene3D - 30 95 IPR036879 GO:0003677|GO:0046983
Lja4g0889 247 SUPERFAMILY SRF-like 19 90 IPR036879 GO:0003677|GO:0046983
Lja4g0889 247 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Lja4g0889 247 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0889 Lja-Chr4 7440436 7445968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0889 16 247 MADS-box Gene Family AT3G58780 62.343 2.72e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g0889 K-box 4.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0889 K09264 - gmx:732595 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0889 4 7440436 7445968 Lja4g0889 4 7440436 7445968 ECH
Lja4g0889 4 7440436 7445968 Lja6g2887 6 57999103 58007308 PCT