Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0885 ATGAAGCTTATTATTTCTGTTGAAGGTGTAAAGGAGTTTGACACTAGGTGGATCGGGTGGGCTGGTGTGAATGTGCCTGATGAAGTTGGGCAGAAGGCATTGACTAAAGCTTTAGCTGAAATGCGATGCATCCCGGTATTTCTCGATGAGGAGATAGTGAATCAGTACTACAATGGTTACTGCAACAACATCTTATGGCCTCTACTTCATTACCTCGGCCTTCCGCAAGAAGATCGACTCGCAACAACCCGTAGTTTCCAATCTCAATTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTGAATCAGAATTATGAGGAAGGAGATGTTGTTTGGATCCATGATTACCACCTAATGTTCCTCCCAAAATGTTTAAAAGAGTACAATGACAAGATGAAAGTTGGCTGGTTTCTCCATACTCCTTTCCCTTCTTCAGAAATTCATAGGACCCTGCCATCCAGATCAGAGTTGTTGAGATCTGTACTCGCCGCTGATTTGGTGGGATTCCATACTTACGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATACTTGGCCTTGAAGGTACACCTGAAGGAGTAGAAGATCAAGGGAGGCTAACCCGTGTGGCTGCGTTTCCTATTGGAATTGACTCTCAAAGATTTATTCGAGCCCTTGAGCTCCCTGAAGTCCAGAATCACATGAAAGAACTGAAAGGAAGATTTGCAGGCCGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATAAAAGGAATTCCCCAAAAAATCCTGGCATTTGAGAAGTTCCTTGAGGAGAACTCAGATTGGCGTGATAAAGTCGTCTTGATTCAAATTGCAGTACCTACTAGGACAGATTGCCCTGAATATCAAAAGCTTACCAGCCAGGTGCATGAAATTGTAGGACGCATCAATGGAAGATTTGGAACACTCACTGCTGTCCCCATACACCATCTGGATCGGTCACTTGACTTTCATGCATTATGTGCCCTCTATGCCGTTACTGATGTAGCACTTGTTACATCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGTCAAGCTTCCAAGAAGGGAGTTCTCATTTTAAGCGAGTTTGCAGGTGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCATGGAACATCACAGAGGTTGCTGCTTCTATTGGTTATGCCTTGGACATGCCAGCTGATGAAAGAGAAAAACGGCATCAGTTTAACTTCCAGCATGTGACAACTCACACATCACAAGAATGGGCTGCAACTTTCGTGAGTGAACTAAATGATACCATAGTGGAAGCTCAGCTTAGGACAAGACAAGTTCCTCCATTACTTCCCAACGAAATGGCAGTTGACTGTTTCTCCAAATCCAATAACAGATTAATCATACTGGGTTTCAATGCCACTTTGACTGAACCAGTAGATGCACTTGGAAGTGGTGGTCAAATTAGAGAAATGGAACTTAAACTGCACCCAAATCTGAAGGAGCCTCTAAAGATATTATCTGAGGATCCAAAGACAACAATAGTTGTTCTGAGCGGGAGCGATCGATCTGTCTTGGACAAAAACTTCAGTGAATACAATATGTGGTTAGCAGCAGAAAATGGGATGTTCCTGAGACTTACTTCAAGTGAATGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTTAAGCATGTTTTCGAGTATTTCACTGAAAGAACACCACGGTCTCATTTTGAGGTTCGCGAGACTTCAGTTTTATGGAACTACAAGTATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGAGATCTGCTTCAGCATCTTATGACAGGTCCAATATCAAATGCATCACTTGACGTTGTCCAAGGTGGTCGATCAGTTGAGGTCAGGGCAGTTGGTGTGTCAAAGGGAGCAGCTATTGACCGTATCCTGGGTGAGATAGTTCATCACAAAGGGATGAATGCACCAATTGATTATGTTCTATGCATTGGGCACTTTCTGGCAAAGGATGAAGATGTTTACAAATTTTTTGAGCCAGAGCTTCCATCTGAAGCATCTCCCTTAGCAAGAGCTATGCTATCCAATATCTACAGGCCTTCAACTCTGCCAAAAATTTCAACCAGCAAAATCGGGTCAAAAGCATCTCGCTATAAGAAACAACGTTCATTGTCAAATATAGAAAAGAGAGAAATTGATCGAGCAAGTGGTGATCCGGGGAGACCAACAAGTAGGGATAGAATATCACTGAATGAGGGTTCTTCAGTGCTTGATCTTAAAGGTGATAATTACTTCTCTTGTGCGGTTTCACGGAAGAGATCAACCGCACGCTACCTTCTTAAAACCTCAGATGATGTTGTCAATCTCTTGAGTGACCTGGCGGATCATTCTTCATCACCATCAACTTGTGACTGA 2445 0.427 MKLIISVEGVKEFDTRWIGWAGVNVPDEVGQKALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLLHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNQNYEEGDVVWIHDYHLMFLPKCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSQRFIRALELPEVQNHMKELKGRFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSDWRDKVVLIQIAVPTRTDCPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFQHVTTHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPNEMAVDCFSKSNNRLIILGFNATLTEPVDALGSGGQIREMELKLHPNLKEPLKILSEDPKTTIVVLSGSDRSVLDKNFSEYNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFEVRETSVLWNYKYADVEFGRLQARDLLQHLMTGPISNASLDVVQGGRSVEVRAVGVSKGAAIDRILGEIVHHKGMNAPIDYVLCIGHFLAKDEDVYKFFEPELPSEASPLARAMLSNIYRPSTLPKISTSKIGSKASRYKKQRSLSNIEKREIDRASGDPGRPTSRDRISLNEGSSVLDLKGDNYFSCAVSRKRSTARYLLKTSDDVVNLLSDLADHSSSPSTCD* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0885 814 Pfam Trehalose-phosphatase 496 692 IPR003337 GO:0003824|GO:0005992
Lja4g0885 814 MobiDBLite consensus disorder prediction 731 751 - -
Lja4g0885 814 CDD HAD_TPP 472 691 - -
Lja4g0885 814 Gene3D Glycogen Phosphorylase B; 221 423 - -
Lja4g0885 814 CDD GT20_TPS 10 439 IPR001830 GO:0003824|GO:0005992
Lja4g0885 814 SUPERFAMILY HAD-like 471 688 IPR036412 -
Lja4g0885 814 PANTHER BNAA02G18920D PROTEIN 3 805 - -
Lja4g0885 814 Pfam Glycosyltransferase family 20 10 439 IPR001830 GO:0003824|GO:0005992
Lja4g0885 814 Gene3D - 497 657 IPR023214 -
Lja4g0885 814 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 442 - -
Lja4g0885 814 Gene3D - 563 643 - -
Lja4g0885 814 Gene3D Glycogen Phosphorylase B; 3 220 - -
Lja4g0885 814 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 3 805 IPR001830 GO:0003824|GO:0005992
Lja4g0885 814 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 6 439 IPR012766 GO:0003825|GO:0005992
Lja4g0885 814 MobiDBLite consensus disorder prediction 719 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0885 Lja-Chr4 7407439 7414866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0885 3 810 Trehalose Biosynthesis Gene Families AT1G78580 79.373 0.0 1329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0885 K16055 - gmx:100816642 1446.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0885 4 7407439 7414866 Lja4g0885 4 7407439 7414866 ECH