Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0884 ATGGGGATTCAAGGTCTATTACCGCAATTGAAATCGATTATGGTCCCAATCCACATCAAGGAATTGAACGGTTGTTCTGTGGCGGTAGACACCTATTCTTGGCTCCACAAAGGTGCCTTATCTTGCAGCACTGAGCTCTGCAAAGGGATACCCACAACCAGGCATATTGAGTATTGCATGCGTAAAGTGAACTTGCTGCGCCACTACGGTGTTGAGCCGATTCTAGTATTTGATGGAGGTCTTTTACCCATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGCTAGAAAGGATAATTTTGCACGCGCAATTGAACATGAGTCTGATGGAAATTCTACTGCTGCCTTCCATTGCTACCAGAAAGCTGTTGATATTTCACCTCTAATTGCGCATGAACTCATTCAGGTGTTGAAGCAAGAGAATTTACAGTATATTGTTGCTCCTTACGAAGCAGATGCCCAGATGACATTCTTGGCAATTAGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGTCCAAGAATTATCTTTAAAATGGACCAGTTTGGCCAAGGTGTTCAGTTTCAATATTCCATGCTGCAAAATAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGCGGCTGTGATTATCTTCAGTCATTGCCAGGGATGGGTCTCAAAAAGGCTCACACAAGCATTAAAAGATTTAAAAGTTATGACAAGGTTCTAAAACACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTTTACGAAGAGTCATTCAAGAAGGCTATACTTACTTTCCAATATCAACGGGTTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTAATGTACCTGATGATATTGGTGATGAGTTAGACTTTTTGGGCCCACCCATGCCAAAAGATATAGCACAAGGAATTGCAAAGGGGGATATTGATCCAATTACCAAAATTCCATTTAAGGGAGAGAATCTTATTTCCCCATCCGCAATTGCAGGAACATGTCAATTCAAAACTTCTCATTCTGAAACTGCGAAAAAAAAGATTGATCTACCGGTGCAGAATAATCTTTTGACCAAGTACTTTTGTTTTGCATCTCTTGAAGCAAAAAGGAAATTCATAGCACCTAGGGTGTCACTGTCACCTACTACTTTAAGTCAAAGTTCATTGGATTCCTCATCTGTCAGTTCCCTGGAACATGAGACTTTAGAAGCTGCTGCTAGTGAAACAAAGAACTCTGCTGCATCCATAGTTGACTCTGAAAATTGGAGCAATGACCCTCTTTCCAATAGCCATATTGAGAACAGTTTGACCACCAACATTTCTGAATTTATGGAATCTCCACATCATGTATCTATGGCGAGTGAGAAGAGAAGTCCTGAACATACAAAACTGCAGCAGTCGAGGAATCCAATTCATAAACCTTGTCTGGCTTTGCATAAGGAGCATGAGCACACAAGTGTCCAAGACACAGTAGAACCAAAAACCAGGGAGGCAACGGGCAAGGTAATTGTAAGAAGTCGTTATTTTCAGCACAAGCAAGTAGAAAAAAAAGTTTGTGGTGAGAAACAAGATCACTTGTCGTCTGGCATTGTCATTGATGGGAGACAAAATGCCATATCTGACAGTGATTTATGTAACGATCATTTGAAGAATAAAGACTTGAAAAGGAAGATCTCCCCTAATGACCATACTCAAAATGAAAATTCGCAGCCCAGGCAAATGCATCCTGCTTCACCTCCTCATGACAATGGTTTCTGTGATGACAAAGTTGATGGACCATTTGCAGAAAGGAGTGCTGAAGAAGAAAAATTTGGGACAACTATTTCCCATTTAAGCCATTATTCTCAAATAGCTGAGAAGTCTATGGATAGATTTGAATCTGTGATATCGTCCTTTAGATGTTCTTCTGGTTCTCGTGTCAGCGGTCTCAGGGCTCCTCTAAAAGATGTTCGGAATACTTGTAATAATAGGCCAACAACTGTGGACTTAAAGCAATATGCGTATGTGCCAAAACAAAGGAAGAAAAGCAGAATAGCTCCTGGGAATTAA 2091 0.4036 MGIQGLLPQLKSIMVPIHIKELNGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMRKVNLLRHYGVEPILVFDGGLLPMKSEQENKRARARKDNFARAIEHESDGNSTAAFHCYQKAVDISPLIAHELIQVLKQENLQYIVAPYEADAQMTFLAISRQVDAVITEDSDLIPFGCPRIIFKMDQFGQGVQFQYSMLQNNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKKAHTSIKRFKSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNVPDDIGDELDFLGPPMPKDIAQGIAKGDIDPITKIPFKGENLISPSAIAGTCQFKTSHSETAKKKIDLPVQNNLLTKYFCFASLEAKRKFIAPRVSLSPTTLSQSSLDSSSVSSLEHETLEAAASETKNSAASIVDSENWSNDPLSNSHIENSLTTNISEFMESPHHVSMASEKRSPEHTKLQQSRNPIHKPCLALHKEHEHTSVQDTVEPKTREATGKVIVRSRYFQHKQVEKKVCGEKQDHLSSGIVIDGRQNAISDSDLCNDHLKNKDLKRKISPNDHTQNENSQPRQMHPASPPHDNGFCDDKVDGPFAERSAEEEKFGTTISHLSHYSQIAEKSMDRFESVISSFRCSSGSRVSGLRAPLKDVRNTCNNRPTTVDLKQYAYVPKQRKKSRIAPGN* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0884 696 Pfam XPG I-region 142 226 IPR006086 GO:0004518
Lja4g0884 696 MobiDBLite consensus disorder prediction 461 484 - -
Lja4g0884 696 Gene3D - 209 281 - -
Lja4g0884 696 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Lja4g0884 696 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Lja4g0884 696 PANTHER EXONUCLEASE 1 1 670 IPR032641 GO:0006281|GO:0035312
Lja4g0884 696 MobiDBLite consensus disorder prediction 565 606 - -
Lja4g0884 696 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Lja4g0884 696 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Lja4g0884 696 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Lja4g0884 696 MobiDBLite consensus disorder prediction 463 481 - -
Lja4g0884 696 Gene3D - 1 207 - -
Lja4g0884 696 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 333 IPR036279 -
Lja4g0884 696 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Lja4g0884 696 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Lja4g0884 696 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lja4g0884 696 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Lja4g0884 696 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Lja4g0884 696 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 670 IPR006084 -
Lja4g0884 696 SMART xpgineu 138 208 IPR006086 GO:0004518
Lja4g0884 696 SMART xpgn3 1 99 IPR006085 GO:0004518
Lja4g0884 696 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0884 Lja-Chr4 7401535 7406690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0884 1 264 Core DNA Replication Machinery Family AT5G26680 25.271 1.36e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0884 K10746 - gmx:100798062 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0884 4 7401535 7406690 Lja4g0884 4 7401535 7406690 ECH