Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0883 ATGCCTCGTAAAGTAAACTACGGACTCGATTACTACGAAGACGACGACTATGCCGACTACGACTACGATCTTGACATACAAGAACAACATGTAACAGGAGAAGGACCTGATACAAAGCAAGAGACCGTGAGACCTGGACTTTGGCCATGCCCCATTTGCACTTATGACAACGATGACAGTATGACTACCTGCGATATTTGTGGTGTTGTACGTCATTCCTTTGTTAACATGGCAACTTCTAACACTATCAAACCAGTTGAAGACATAAGCAAAACTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAACCATTACCAAAACAGATTCCCAAAGAGCTTGAATTATTTCCTAAGCAGGATGATGGTTTTCAGACAGGTGGCAGTGACTTCTACAAGCTTGAGAATGTCCAAGGAGAATTTCATGAAATTCATAAGGCTTTTAACACTCAAAGCCATCCCTATTTAAACATAGATTCTTTCAAGTTTGATGGTCCATCCCCAGATGATGTGGTTTATTCTGGCCTAAGTTCTTCAAAAAAGGGTCTGAAAGATAAAGTTGCAAACTCAAAAACTAATCAGCTTTCGTCAAGCAACAGAGAGAAAAATGAACTTTTTGCACAACCAAATGCTGAAAGTTTAGACAACTTATCATCCCTAATGCAAAAGAGCAGGCAGGGAAGTTCAGCTGATAACAAGCTGGCCAAAAATGCAGAAATTGATTTGGTAACTGGTAAAACTTCAAACAGCTTACAAGCATCTTTGGCAAAAGACAAAGGTGACAATATGAATAAAATAAATTCTTCGAAAAGGGGTACGATTGATATTCAATCAAGCAAAGAAACATTAGGTAGTTTGTCTGCACTGCCAAAAGTCAAAGAAAGTGATAAGATTAATTTCTCTTCTACCAGAGATGGAAAACCTGAAAGTGTTTCCAGCAGTTTTAACAACATGGTTCTTGATGTAAAATCTGGAAATTCTGATAGTACTAATTCTAGGGGATCTCGTCCACAAGTCCCTTATAAGCCGGAAAACTGGATGCTCCCTCAGCAATCTTCTAAAGATGCATTGTCTCAGCTGAATCTTGCAATTGTTGGTCACGTTGATTCTGGAAAATCTACACTATCTGGTAGGTTATTACATCTATTGGGACGAATTTCCCCAAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACGATGACAGTGGCTGTTGCTTATTTTGACACCAAGAAATATCACGTTGTTGTGCTCGACTCCCCTGGCCATAAAGATTTTGTCCCTAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCAGGTATGGATGGTAGCAAAGGACAAACAAGGGAGCATGCACAACTTATTAGAAGTTTTGGTGTTGACCAGGTTATAGTTGCTGTAAATAAGATGGATGCTGTGGGATACTCCGAAAATCGATTTGATTTTATTCGGCAGCAGCTCGGAAGTTTTCTCCGCACATGTGGATTCAAAGAGTCTTCTCTATCATGGATTCCCATGAGTGTGATGGAAAATCAAAATTTGGTAGCATCCCCTAAGGACACTGATTTTAAAAACTGGTATAGTGGACCTTATCTATTAGAGGCAATTGACTCGCTCCAACCTCCTATTAGAGAATTCTCAAAACCTCTACTAATGCCAATATGTGATGTTATCAAATCAACTACACTGGGACAGATTTCTGCTTGTGGTAAACTGGAAGCAGGAGCCCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGCGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGTCTGCAATATTGCTAGAGCTGGAGATAACGTAGCCGTAACGTTGCACGGTATTGATGGAAGTCATGTGATGGCAGGAGATGTACTATGCCATCCTGACTACCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTTGTCTTGGATGGTGCAAATCCCATATTGGTGGGAGCTCAGTCAGAGTTTCATATACACCATGCAAAGCAACCTGCTAGAGTTTCGAGAATATTGTCGGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTCATTGAGGTGACTTTGCAGGAACCGGTATGTGTTGTAGAGTTCTCTACTTGTAAAGCTCTTGGAAGGGTGTCCCTCAGATCATTAGGAAGAACAATTGCTGTCGGACTTGTAACAAGAATAATTGAAGAACAAGAATAA 2367 0.4128 MPRKVNYGLDYYEDDDYADYDYDLDIQEQHVTGEGPDTKQETVRPGLWPCPICTYDNDDSMTTCDICGVVRHSFVNMATSNTIKPVEDISKTPGASKLARSLFQPLPKQIPKELELFPKQDDGFQTGGSDFYKLENVQGEFHEIHKAFNTQSHPYLNIDSFKFDGPSPDDVVYSGLSSSKKGLKDKVANSKTNQLSSSNREKNELFAQPNAESLDNLSSLMQKSRQGSSADNKLAKNAEIDLVTGKTSNSLQASLAKDKGDNMNKINSSKRGTIDIQSSKETLGSLSALPKVKESDKINFSSTRDGKPESVSSSFNNMVLDVKSGNSDSTNSRGSRPQVPYKPENWMLPQQSSKDALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISPKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGAFEAGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDAVGYSENRFDFIRQQLGSFLRTCGFKESSLSWIPMSVMENQNLVASPKDTDFKNWYSGPYLLEAIDSLQPPIREFSKPLLMPICDVIKSTTLGQISACGKLEAGALRSGSKVLVMPSAVAGTVRSLERDSNVCNIARAGDNVAVTLHGIDGSHVMAGDVLCHPDYPVAVAKHLELKVLVLDGANPILVGAQSEFHIHHAKQPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVTLQEPVCVVEFSTCKALGRVSLRSLGRTIAVGLVTRIIEEQE* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0883 788 Pfam Elongation factor Tu C-terminal domain 677 783 IPR004160 -
Lja4g0883 788 PANTHER TRANSLATION FACTOR 51 786 - -
Lja4g0883 788 CDD EF1_alpha 361 580 - -
Lja4g0883 788 Gene3D Translation factors 585 674 - -
Lja4g0883 788 Pfam Elongation factor Tu GTP binding domain 360 576 IPR000795 GO:0003924|GO:0005525
Lja4g0883 788 SUPERFAMILY Ran binding protein zinc finger-like 46 71 IPR036443 -
Lja4g0883 788 MobiDBLite consensus disorder prediction 320 338 - -
Lja4g0883 788 MobiDBLite consensus disorder prediction 254 273 - -
Lja4g0883 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 602 IPR027417 -
Lja4g0883 788 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 680 784 IPR009001 -
Lja4g0883 788 CDD HBS1_C_III 675 783 - -
Lja4g0883 788 SUPERFAMILY Translation proteins 579 675 IPR009000 -
Lja4g0883 788 ProSitePatterns Zinc finger RanBP2-type signature. 48 67 IPR001876 -
Lja4g0883 788 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 357 588 IPR000795 GO:0003924|GO:0005525
Lja4g0883 788 PANTHER OS04G0595300 PROTEIN 51 786 - -
Lja4g0883 788 ProSiteProfiles Zinc finger RanBP2 type profile. 44 73 IPR001876 -
Lja4g0883 788 PRINTS GTP-binding elongation factor signature 440 450 IPR000795 GO:0003924|GO:0005525
Lja4g0883 788 PRINTS GTP-binding elongation factor signature 456 467 IPR000795 GO:0003924|GO:0005525
Lja4g0883 788 PRINTS GTP-binding elongation factor signature 361 374 IPR000795 GO:0003924|GO:0005525
Lja4g0883 788 PRINTS GTP-binding elongation factor signature 501 510 IPR000795 GO:0003924|GO:0005525
Lja4g0883 788 PRINTS GTP-binding elongation factor signature 420 428 IPR000795 GO:0003924|GO:0005525
Lja4g0883 788 SMART zf_4 46 70 IPR001876 -
Lja4g0883 788 MobiDBLite consensus disorder prediction 320 344 - -
Lja4g0883 788 MobiDBLite consensus disorder prediction 188 202 - -
Lja4g0883 788 MobiDBLite consensus disorder prediction 182 202 - -
Lja4g0883 788 CDD HBS1-like_II 587 671 - -
Lja4g0883 788 Gene3D - 349 581 IPR027417 -
Lja4g0883 788 Gene3D Translation factors 678 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0883 Lja-Chr4 7385906 7392613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0883 157 786 Eukaryotic Initiation Factors Gene Family AT5G10630 60.285 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0883 K14416 - gmx:100801724 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2829 6 57392833 57395648 Lja4g0883 4 7385906 7392613 PCT