Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja4g0872 | ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACAATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTCGTCCTCCGTCTCCGCGGTGGCGCCAAGAAGAGGAAGAAGAAGACCTACACTAAGCCCAAGAAGATCAAGCACAAGCACAGGAAGGTGAAGCTCGCTGTTCTCCAGTTCTACAAGGTGGATGACTCCGGGAAGGTTCAGAGGCTGAGGAAGGAGTGCCCCAATGCTGAGTGCGGCGCCGGGACTTTCATGGCGAACCACTTTGATCGTCACTACTGTGGCAAGTGTGGGCTCACCTATGTCTACCAGAAGCCCACTGCTTAG | 468 | 0.5556 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPTA* | 156 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja4g0872 | 155 | SMART | Ribosomal_S27_2 | 102 | 147 | IPR002906 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja4g0872 | 155 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Lja4g0872 | 155 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Lja4g0872 | 155 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Lja4g0872 | 155 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
| Lja4g0872 | 155 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
| Lja4g0872 | 155 | PANTHER | UBIQUITIN | 1 | 146 | - | - | |
| Lja4g0872 | 155 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Lja4g0872 | 155 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Lja4g0872 | 155 | SUPERFAMILY | Zn-binding ribosomal proteins | 100 | 153 | IPR011332 | GO:0006412 | |
| Lja4g0872 | 155 | PANTHER | UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 | 1 | 146 | - | - | |
| Lja4g0872 | 155 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515 | |
| Lja4g0872 | 155 | SUPERFAMILY | Ubiquitin-like | 1 | 93 | IPR029071 | - | |
| Lja4g0872 | 155 | Gene3D | - | 81 | 155 | IPR038582 | - | |
| Lja4g0872 | 155 | Pfam | Ribosomal protein S27a | 102 | 147 | IPR002906 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja4g0872 | 155 | Gene3D | - | 1 | 80 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja4g0872 | Lja-Chr4 | 7310093 | 7310850 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja4g0872 | 1 | 152 | Cytoplasmic Ribosomal Protein Gene Family | AT3G62250 | 96.711 | 1.27e-108 | 304 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja4g0872 | K02977 | - | psom:113282444 | 282.337 |