Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0854 ATGGCAATGAGCAATAAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGAAGGATTTATTGGTCCAAAAAGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTGTTTGTATGCTTAAAATGTTGCGGTGTGCACAGAAGTCTTGGTACTCATATTTCAAGGATTTTGTCTGTGACACTGGATGAATGGTCAAGTGATGAAATAGATGGAATGATGGAAGTAGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATATACAAAACCTGGACCAGATGCCAGTCATGAGGAGCGCGCAAAATTCATCCGGTCAAAGTACGAGCATCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTGTCAGGAAAAGGGTCAACACAAAGCAATCGGCAATCAAGTTTCTCCAAAAGGATTATAGATAGTTTTCGAATTACCAAGAGCTCACCGAACATGGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTAGCAATCAGAGATATGATGACAAGCGATCCATATGTTGTCTTGAAACTTGGCCAGCAGACTGTTCAGACAACTGTAGTAAAGAGTAATTTGAATCCTGTCTGGAATGAGGAACTTATGCTATCTGTTCCTCAGCAATTTGGACCAATTGATTTGAAGGTGTTTGATCATGACTATTTTTCAGCTGATGACATAATGGGAGAAGCAGAGATTGATCTTCAACCCCTGATAACATCTGCAATGGCATTCGGAGATGCCGGAATGTTCGACGATATGCAGATAGGAAAATGGCTGAAATCCAATGACAATGCACTTGTAGGAGATAGCACTGTCAACATTCTTGATGGTAAGGTTAAACAAGAGATGACACTGAAGCTTCAGAACGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATACCCCTTGATCATTAA 1005 0.399 MAMSNKRLEFGRPVSSKRRLKDLLVQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGTHISRILSVTLDEWSSDEIDGMMEVGGNASANSIYEAYFPEGYTKPGPDASHEERAKFIRSKYEHQEFLKPSLRIVSGKGSTQSNRQSSFSKRIIDSFRITKSSPNMEGMVEFIGMLKVKVIKGTNLAIRDMMTSDPYVVLKLGQQTVQTTVVKSNLNPVWNEELMLSVPQQFGPIDLKVFDHDYFSADDIMGEAEIDLQPLITSAMAFGDAGMFDDMQIGKWLKSNDNALVGDSTVNILDGKVKQEMTLKLQNVESGELDLELEWIPLDH* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0854 334 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Lja4g0854 334 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Lja4g0854 334 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Lja4g0854 334 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 334 - -
Lja4g0854 334 CDD ArfGap 20 126 - -
Lja4g0854 334 Gene3D Arf GTPase activating protein 5 137 IPR038508 -
Lja4g0854 334 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Lja4g0854 334 SMART C2_3c 179 274 IPR000008 -
Lja4g0854 334 CDD C2_ArfGAP 177 321 - -
Lja4g0854 334 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 174 271 IPR035892 -
Lja4g0854 334 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Lja4g0854 334 Gene3D C2 domain 176 334 IPR035892 -
Lja4g0854 334 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Lja4g0854 334 ProSiteProfiles C2 domain profile. 159 275 IPR000008 -
Lja4g0854 334 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 334 IPR044518 GO:0005096|GO:0005543
Lja4g0854 334 SMART arf_gap_3 18 139 IPR001164 GO:0005096
Lja4g0854 334 Pfam C2 domain 179 268 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0854 Lja-Chr4 7130065 7147369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0854 3 334 C2H2 Transcription Factor Family AT4G21160 72.997 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0854 K12486 - gmx:100777084 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0854 4 7130065 7147369 Lja4g0854 4 7130065 7147369 ECH