Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0852 ATGGCCTCTGCTCATGACCTCACTGATAATGAAGATGATGAGCAGGAGCAGTCAGAATCACCAGTGCAATCTTCATCTGCAAATGGAATTTCTGATCCAGGTATAGGTACCCAGAATATTCAATATGCAACACCTGGCCAGCTTGGAACTGGGCATCCTATGGTGCCACCTGTTTATCCATATCCAGATCCTTACTGTAGAAGCATCTTTGCTCCCTACGAGACACAACCTTATCCCCCACAACCCTATGGTGGACAGCCAATGGCCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGCGTTCCTCTTCCAACTGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAATATCATGGAATATTAAGACGTAGACAATCCCGTGCCAAAGCTGAATCAGAAAAGAAAGTTATAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTTAGGAGAGCAAGAGGATGTAGCGGTCGATTTCTGAATGCAAAGAAAGATGAGGATCAACAAGATGATGTGGAATCACCTGACAAATCACAGTCCAAGATCAATCTCAATTGTGATAAAAATGATCCTAAATCATCAGATAGGACATCCTTGAACTAG 621 0.4332 MASAHDLTDNEDDEQEQSESPVQSSSANGISDPGIGTQNIQYATPGQLGTGHPMVPPVYPYPDPYCRSIFAPYETQPYPPQPYGGQPMAHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVIRNRKPYLHESRHLHALRRARGCSGRFLNAKKDEDQQDDVESPDKSQSKINLNCDKNDPKSSDRTSLN* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0852 206 MobiDBLite consensus disorder prediction 166 183 - -
Lja4g0852 206 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Lja4g0852 206 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Lja4g0852 206 Gene3D - 108 169 - -
Lja4g0852 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 187 - -
Lja4g0852 206 MobiDBLite consensus disorder prediction 1 48 - -
Lja4g0852 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 187 IPR001289 GO:0003700|GO:0006355
Lja4g0852 206 MobiDBLite consensus disorder prediction 166 206 - -
Lja4g0852 206 MobiDBLite consensus disorder prediction 19 46 - -
Lja4g0852 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Lja4g0852 206 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Lja4g0852 206 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Lja4g0852 206 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0852 Lja-Chr4 7116914 7122575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0852 2 204 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.098 1.04e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lja4g0852 CBFB_NFYA 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0852 K08064 - gmx:100499754 318.931