Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0849 ATGCCTCTTTCTGTGCTTGGAGACTCATCATCAAGCAAGGACATGGATTCTGGCAAGTATGTGAGGTATACTCCTGAGCAAGTGGAAGCTTTGGAGAGGTTGTATGCTGAATGTCCAAAGCCAAGTTCTTCCAGAAGGCACCAACTCATTAGGGAGTGTCACATCCTTGCTAACATTGAACCTAAACAGATCAAAGTTTGGTTTCAGAATCGTAGATGCCGCGAAAAGCAGCGCAAGGAATCATCTCGCCTGCAGACAGTGAATAGAAAGCTGACTGCGATGAATAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCAAAGTTGGTTTATGATAATGGATACATGAAACAACAAGTGCAGACCGCATCTGCTACTACTACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGCAACACCAACAGCTATTCCCCAAAACTAAGCATCCCCAGTGGGATGCTAATAACCCAGCTGGTCTTCTCGCAATAGCTGAGGAGGCCCTGGCAGAGTTCCTTTCCAAGGCTACCGGAACTGCTGTCAACTGGGTCCCAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTTGCTGTTTCCCGCAACTGTCGTGGGGTAGCAGCCCGAGCCTGCGGCCTTGTGAGCCTTGAGCCCGCAAAGGTTGCTGAGATTCTTAAAGATCGTCCATCTTGGTATCGTGACTGCCGATGCCTCAATGTTTTGAGCATAGTCCCCACTGCAAATGGGGGCATAATAGAGCTCTTGTATATGCAGACCTATGCTCCTACAACATTGGCTGCAGCAAGAGACTTCTGGACACTACGATACACAACAAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGATCCTTGACTTCTTCAATTGGTGGTCCAACAGGGCCTCCTGCTTCAAGCTTCGTAAGAGCTGAAATGTTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACGTTGATTTAGATATTCGGAGTGTTCCTGAAGTATTGAGGCCCCTCTATGAATCACCTAAAAATTTGGCTCAAAAATCAACTATTGCTGCTTTGCGACATGTAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCATTATGGTGGGGGACGTCAGCCTGCTGTCTTGAGGACATTTAGTCAACGACTTTGCAAAGGGTTCAATGATGCTGTCAATGGGTTTGCGGATGATGGTTGGTCACTGATGGGTAATGATGGGGTGGAAGACGTGACAATAGCCATAAACTCATCTCAAAACAAGTTTTTTGGCTCTCATTATAATACATCATTGCTCCCACCATTTGGAGGTGGGGTCCTTAGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTCCTTTGCTTGTTCGCTTCTTGAGAGAGCATCGTTCTGAGTGGGCTGATTATGGAGTTGATGCATATTCAGCTGCATGTCTTAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGGCCCATTAGCTACCCCAGCAGCCAGGTCATTTTACCCCTTGCTCCTACTGTGGAGCATGAGGAGTTCTTGGAGGTAGTTCGTATAGAAGGTCATGTTTTTCCCCCTGAAGATTTGCCTTTGGCTGGTGATATGTATCTCTTGCAGCTGTGCGGTGGAGTTGATGAAAGTGCAATTGGAGCATGTGCACAGCTGGTGTTTGCGCCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGCATCATAGCATTGGATCCTAAAACAGATGGGCCGGCTGCAACTAGGACCTTGGATTTGGCATCGACACTGGAAATAGGATCTAGTAATGCTCGTCTAGCTGGTGAAGGCAATTTGAACAACTACAACCTGAAGTCGGTCCTTACAATTGCATTCCAGTTTTCCTTTGAGAACCATTTGCAGGACAATGTAGCTGCTATGGCTCGCGATTATGTGCGTAATGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCAATCACTCCCTCTCCGTTCAGTGCCCAGCTAGGGCAGAAGTCCCTTCCCGGCCCCCCTGAGGCTCTTACTTTAGCACGATGGATCTATAGAAGCTACAGGGTCCACACCGGCACTGAGCTTTCTAGAGTTGAGTCCACATGTGGCGATGCAATCATAAAGAAACTTTGGCACCATTCAGATGCAATAATTTGCTGTTCTATAAAATCAATTGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTCGTTACTCTTCAAGATATAATGCTCGATAAAGTTCTTGATGAAGCTGGCAGGAAGATTCTCTGCATGGAGTTCTCCAAGATAATGCAACAGGGATTTGCATATCTGCCAGCTGGAATATGTGTATCCAGTATGAATCGACCTGTGTCGTATGAGCAGGCCATAGTATGGAAAGTTCTGGATGACCACGATTCCAATCACTGCCTTGCCTTCATGTTCATGAACTGGTCTTTTGTTTGA 2544 0.4627 MPLSVLGDSSSSKDMDSGKYVRYTPEQVEALERLYAECPKPSSSRRHQLIRECHILANIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLTAMNKLLMEENDRLQKQVSKLVYDNGYMKQQVQTASATTTDNSCESVVMSGQQHQQLFPKTKHPQWDANNPAGLLAIAEEALAEFLSKATGTAVNWVPMIGMKPGPDSIGIVAVSRNCRGVAARACGLVSLEPAKVAEILKDRPSWYRDCRCLNVLSIVPTANGGIIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSIGGPTGPPASSFVRAEMFPSGYLIRSCEGGGSIIHIVDHVDLDIRSVPEVLRPLYESPKNLAQKSTIAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCKGFNDAVNGFADDGWSLMGNDGVEDVTIAINSSQNKFFGSHYNTSLLPPFGGGVLSAKASMLLQNVPPPLLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPISYPSSQVILPLAPTVEHEEFLEVVRIEGHVFPPEDLPLAGDMYLLQLCGGVDESAIGACAQLVFAPIDESFADDALLLPSGFRIIALDPKTDGPAATRTLDLASTLEIGSSNARLAGEGNLNNYNLKSVLTIAFQFSFENHLQDNVAAMARDYVRNVVRSVQRVAMAITPSPFSAQLGQKSLPGPPEALTLARWIYRSYRVHTGTELSRVESTCGDAIIKKLWHHSDAIICCSIKSIASPVFTFANQAGLDMLETTLVTLQDIMLDKVLDEAGRKILCMEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIVWKVLDDHDSNHCLAFMFMNWSFV* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0849 847 SMART HOX_1 16 82 IPR001356 GO:0003677
Lja4g0849 847 ProSiteProfiles 'Homeobox' domain profile. 14 78 IPR001356 GO:0003677
Lja4g0849 847 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g0849 847 SMART START_1 167 377 IPR002913 GO:0008289
Lja4g0849 847 CDD bZIP 71 110 - -
Lja4g0849 847 Pfam START domain 168 376 IPR002913 GO:0008289
Lja4g0849 847 CDD START_ArGLABRA2_like 162 378 - -
Lja4g0849 847 CDD homeodomain 19 79 IPR001356 GO:0003677
Lja4g0849 847 Pfam Homeodomain 19 77 IPR001356 GO:0003677
Lja4g0849 847 Coils Coil 88 108 - -
Lja4g0849 847 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Lja4g0849 847 Gene3D - 9 85 - -
Lja4g0849 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 8 847 - -
Lja4g0849 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 8 847 IPR044830 GO:0003700
Lja4g0849 847 MobiDBLite consensus disorder prediction 1 17 - -
Lja4g0849 847 ProSiteProfiles START domain profile. 158 358 IPR002913 GO:0008289
Lja4g0849 847 SUPERFAMILY Bet v1-like 168 379 - -
Lja4g0849 847 Pfam MEKHLA domain 702 846 IPR013978 -
Lja4g0849 847 Gene3D - 168 382 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0849 Lja-Chr4 7078843 7085029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0849 10 847 Homeobox Transcription Factor Family AT1G30490 74.733 0.0 1301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja4g0849 START 1.3e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0849 K09338 - gmx:100807637 1439.86