Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0846 ATGGGAAATTGCTGGTGTAGGTTGGAATCATCAGATTATAGAGTCTCATCCAATGTAAAGTCAGAACAAAACCAGGTAATCAAACAAAGGCATGATGATAGTAAGTTACCATCCAACCCTGAAGAAGTAGAAGACCTTCGCCGCGATTCAGCAGCAAATCCATTGATTGCATTCACTTATGATGAGCTAAAGCTGATCACTGGAAATTTTAGGCCAGATCGTGTGTTGGGAGGAGGAGGATTTGGAAGTGTTTATAAAGGTTTTATTTCTGAGGTGTTAAGACAGGGGCTTCCTTCTGTTGCTGTTGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGCCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTGAAATTAATTGGATATTGCTGTGAAGATGAGCATAGGGTGCTAATATATGAGTACATGGCCCGGGGAAGTGTGGAGCACAATTTGTTCTCAAAAATTTTGCTTCCCTTGCCATGGTCCATAAGAATGAAGATTGCATTTGGCGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAAAAACCTGTCATCTACCGTGATTTTAAGACATCAAATATCTTACTAGACCAGGACTATAATGCAAAACTTTCTGACTTTGGCCTCGCTAAAGATGGACCAGTTGGAGACAAATCCCATGTTTCTACTCGAATAATGGGAACATATGGCTATGCTGCACCTGAATACATTATGACAGTTATCTATTTTGCAGGTCATCTTACCCCTAGAAGCGATGTTTACAGTTTTGGTGTTGTTCTCCTTGAGCTTCTCACGGGAAGAAAATCACTAGACAAGCTAAGACCTGCCAGAGAACAGAACCTCACAGAATGGGCACTTCCATTGCTGAAGGAAAAGAAAAAAGTACAAAACATTATAGATCCAAGGTTAGAAGGTCATTATCCAGAAAAAGGATTTCACAAAGCTGCAATGCTTGCATATCATTGCTTGAACAAAAATCCAAAAGCAAGGCCTCTCATGAGAGACATTGTGGATTCATTGGAGCCTTTGACAACATACAGTGAGGTTTCTATTGAGAAAACATTGACCATAGTCGGTGAGGTTCCAGAAGCTGAATTGAAAAAGAAAGATGAAAAATGA 1158 0.4059 MGNCWCRLESSDYRVSSNVKSEQNQVIKQRHDDSKLPSNPEEVEDLRRDSAANPLIAFTYDELKLITGNFRPDRVLGGGGFGSVYKGFISEVLRQGLPSVAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMARGSVEHNLFSKILLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTVIYFAGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLTEWALPLLKEKKKVQNIIDPRLEGHYPEKGFHKAAMLAYHCLNKNPKARPLMRDIVDSLEPLTTYSEVSIEKTLTIVGEVPEAELKKKDEK* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0846 385 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Lja4g0846 385 MobiDBLite consensus disorder prediction 25 45 - -
Lja4g0846 385 Pfam Protein tyrosine and serine/threonine kinase 73 353 IPR001245 GO:0004672|GO:0006468
Lja4g0846 385 Gene3D Phosphorylase Kinase; domain 1 31 153 - -
Lja4g0846 385 Gene3D Transferase(Phosphotransferase) domain 1 154 372 - -
Lja4g0846 385 ProSiteProfiles Protein kinase domain profile. 70 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0846 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Lja4g0846 385 PANTHER OS01G0588500 PROTEIN-RELATED 10 366 - -
Lja4g0846 385 SUPERFAMILY Protein kinase-like (PK-like) 46 353 IPR011009 -
Lja4g0846 385 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 10 366 - -
Lja4g0846 385 MobiDBLite consensus disorder prediction 19 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0846 Lja-Chr4 7054698 7060605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0846 23 364 Glycoside Hydrolase AT3G07070 47.727 8.44e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g0846 PK_Tyr_Ser-Thr 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0846 - - gmx:100775722 689.108