Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0827 ATGGATGGTCGTGGTGACATTCCTCCCCAAAGGGAACCAGTTTTCTTACATGGTGATTTGGATATTTTGATAATAGAAGGCAAGTCACTTCCAAATTTAGATTTATCTACTGAAGCAGTTAGAAAATGCATCACTATGGGAAACATGTGCACACCTCCATTTGTAAAGGGACTCAAAACCCCTTCAGGAAAAGACAAGATCATAACCAGTGATCCTTATGTCTCTGTCTGCATAGCAGGAGCAACCATAGCTCAAACCAGAGTGATTTCTAACTGTGAGAACCCTTTATGGGATGAGCATTTTGTTGTTCCTGTTGCTCACCCTGCTCAAAAAGTGGAGTTCCTTGTGAAGGACAATGATGTTCTTGGTGCTGAGCTCATTGGAGTAGTGGAAATCCCTGTTGACAAAATTTTGTCAGGAAATACAGTTAATGATTGGTTTCCCATCATTGGTCAACATGGAAATTGCTTAAGACCTTACCCTGAATTGCATATTTCTGTTCAGTATAAACCAGTTGGAGTGATTAGCCATTCAGAAAATGAGGATGGCATAACTAATGTAGGAGTTCCTAAAACATATTTCCCTCTTAGGAAAGGAGGGAATGTGACTTTATATCAAGATGCACATGTACCTGATGGCATGCTACCTGAAATTCAACTAGAAGGAGGAAAAGTGTATCAGCAAAATAAGTGTTGGGAAGATATGTGTCATGCAATGTTGGAAGCTCACCACCTGATATATATTGTAGGATGGTCTGTTTATCACCCAGTGAAGCTTGTTAGAGAGCCAACAAAACCACTGCCTTCTGCTGGGGAGCTTTCAATTGGAGAGCTGTTGAAATACAAATCACAAGAAGGACTCAGAGTGGTCATGCTGATTTGGGATGATAAAACTTCACATGACAAGTTTCTTTTGAAAACAGAAGGTGTCATGCAGACTCATGATGAAGAAACTAAGAAGTTTTTTAAGAATTCCACTGTTCATTGTGTACTATCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAACAACAGGTTGTAGGAACCCTCTTTACGCATCACCAGAAATGTGTGCTTGTAGACACTCAAGCTTCTGGGAATAATCGGAAAATAACTGCTTTCATTGGTGGTCTTGATCTGTGTGATGGTAGATATGATACACCTGAACATCGACTTTTTAGTGATCTAGATTCAGTTTTTCATAAAGACTTTCATAATCCTACGTTTCAGATGAATTCGGGTGGACCAAGGCAGCCATGGCATGACTTACATTGCAAAGTTGAAGGTCCAGCTGCATATGATATATTAACCAATTTTGAACAAAGATGGAGGAAGGCGAAAAAATGGCGCGACTTCAGGCTAAAAAAAGTGACAAATTGGCATGACGATGCTTTGCTAAAGATAGATCGGATTTCATGGATTCTCAGTCCATCTTGCGGTCCCAATGGTGAAAATAATGTTCATGTAACTGAAGAAAATGATCCTGAGACTTGGAATGTGCAGGTATTTCGGTCCATAGATTCAGGATCTGTGAAAGGATTTCCAAAGGATATTGACAAAGCTAAGGATCAGAACCTTTTATGTGGAAAAAATTTGAAAGTTGACCAAAGCATCCACATTGCTTATGTAAAAGCAATAAGATCAGCTCAGCACTTCATATATATTGAGAATCAATATTTTCTGGGCTCCTCATATCATTGGCCTTCATATAAAAATGCAGGTGCAAATCACTTGATTCCCATGGAGTTGGCCTTAAAAATTGCAAGCAAGATCAGTGCACATGAACGTTTTTCTGTGTATATAGTTATACCAATGTGGCCAGAGGGGGTTCCAACTAGTGCTTCTGTTCAAGAAATATTGTTCTGGCAGGGACAAACAATGTCTATGATGTACAGGATTGTTGCAGATGCTCTTAAAAACGCAGGTCTCTCTAATCAGTACCATCCACAAGATTATCTCAATTTTTATTGTCTTGGAAAGAGAGAACCTCAATCCCCTGAAAGTCCATTAACATCAAATCAACAATCTGAAAACCGTGCTTTGGTATCAGCTAAAAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGGTAGTTGATGATGAATATGTGATCATTGGATCAGCAAATATTAACCAGAGATCATTGGATGGGTCAAGGGACACAGAAATAGCTATGGGTGCTTATCAACCAAAATATACATGGACAGAAAAGAAATCTCATCCATATGGCCAGGTGTATGGTTACCGAATGTCACTGTGGGCTGAGCACATTGGTAGTCTTGATGATACTTTTGCAGAACCTCACAACTTGGAATGTGTTAGACATGTCAACAACATTGCTAGACAAAATTGGCGCACATATGTGTCTGAAGAAGGAACCCATATGAGAGGACACTTGATGCAGTATCCAGTTAATATCAGCAGTGATGGAAAAGTCAGTGCCCTGAGTGGTCATGAATCTTTTCCTGATGTAGGTGGCAAAATACTTGGATCACATAATTCACTTCCAGATGCACTAACCACATGA 2538 0.394 MDGRGDIPPQREPVFLHGDLDILIIEGKSLPNLDLSTEAVRKCITMGNMCTPPFVKGLKTPSGKDKIITSDPYVSVCIAGATIAQTRVISNCENPLWDEHFVVPVAHPAQKVEFLVKDNDVLGAELIGVVEIPVDKILSGNTVNDWFPIIGQHGNCLRPYPELHISVQYKPVGVISHSENEDGITNVGVPKTYFPLRKGGNVTLYQDAHVPDGMLPEIQLEGGKVYQQNKCWEDMCHAMLEAHHLIYIVGWSVYHPVKLVREPTKPLPSAGELSIGELLKYKSQEGLRVVMLIWDDKTSHDKFLLKTEGVMQTHDEETKKFFKNSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFSDLDSVFHKDFHNPTFQMNSGGPRQPWHDLHCKVEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLKIDRISWILSPSCGPNGENNVHVTEENDPETWNVQVFRSIDSGSVKGFPKDIDKAKDQNLLCGKNLKVDQSIHIAYVKAIRSAQHFIYIENQYFLGSSYHWPSYKNAGANHLIPMELALKIASKISAHERFSVYIVIPMWPEGVPTSASVQEILFWQGQTMSMMYRIVADALKNAGLSNQYHPQDYLNFYCLGKREPQSPESPLTSNQQSENRALVSAKKFRRFMIYVHAKGMVVDDEYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTEKKSHPYGQVYGYRMSLWAEHIGSLDDTFAEPHNLECVRHVNNIARQNWRTYVSEEGTHMRGHLMQYPVNISSDGKVSALSGHESFPDVGGKILGSHNSLPDALTT* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0827 845 PIRSF PLD_plant 9 845 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lja4g0827 845 SMART C2_3c 19 146 IPR000008 -
Lja4g0827 845 SMART pld_4 691 718 IPR001736 GO:0003824
Lja4g0827 845 SMART pld_4 350 385 IPR001736 GO:0003824
Lja4g0827 845 Pfam C2 domain 18 149 IPR000008 -
Lja4g0827 845 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Lja4g0827 845 CDD C2_plant_PLD 13 169 - -
Lja4g0827 845 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 691 718 IPR001736 GO:0003824
Lja4g0827 845 SUPERFAMILY Phospholipase D/nuclease 537 771 - -
Lja4g0827 845 ProSiteProfiles C2 domain profile. 1 147 IPR000008 -
Lja4g0827 845 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Lja4g0827 845 Gene3D Endonuclease Chain A 219 466 - -
Lja4g0827 845 Gene3D Endonuclease Chain A 505 743 - -
Lja4g0827 845 Gene3D C2 domain 14 169 IPR035892 -
Lja4g0827 845 SUPERFAMILY Phospholipase D/nuclease 192 452 - -
Lja4g0827 845 Pfam PLD-like domain 545 727 IPR025202 -
Lja4g0827 845 PANTHER PHOSPHOLIPASE D 13 845 - -
Lja4g0827 845 Pfam Phospholipase D C terminal 765 835 IPR024632 -
Lja4g0827 845 PANTHER PHOSPHOLIPASE D 13 845 IPR015679 -
Lja4g0827 845 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 172 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0827 Lja-Chr4 6886105 6891374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0827 14 844 Phospholipase D Gene Family (Wang group) AT2G42010 54.756 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0827 K01115 - gmx:100779740 1498.41