Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0824 ATGGCGGAAACCGCCGCTACACATCTCAATACCTCACCATTCCTCTCGATTTTGACAGATCTAGGCTCAGCTGCACCCTCACCCTCTACCAATAACTCTATGTGTCCAGTGTCCATGAATTATGTGTTAACAGTCCCTTGGAACACCTCTACCTGCCAAAACTTCCAACCCTTCCCATCCAAAAACCAAACACAGACAAGCCAATGTTGCCAAACCCTCTTGTCCCTCTTTGGCATAGCACTAGCAGAAAACCTCAAGAGAAACTCCCTTTTCCAACTCCCCAACCTCCCTACCTCTATCTCATGCCTTCAAGACTTCCAATTCAAACTCAATTCCCTCTCACTTCCCAAAACCCTTGCTTCCTCCTGCTTTGACCCACTTCAATTTGTCATCACTCCCAACATCTGTGCTCATATTCAATCCAAGCAAGATTGGCTCAACAGGCTTGGTCCAGATAACATAGCACTGGTTAACACTGCCTGTAAACCAGACCTCAATGTTCTCACCAATTGCGGCGCGTGTGTGGATGAAGGGCTCAAGGTTCTGCAGAAGCTCACTGCCATGGATGGGAACACTTCCCATTCCAATGATTGCTTTTACTTCACAATACTTTATATTGCTGGAGTTGTGAATGAGTTTGGGCCTGAAAGCACAGGGACTATGTCTTGCGCTTTGGAATTGCCTCTTAATTCTGATTTAAGTTCCAGAAACAAGAGCCATTATCATCTTGCTCTTGTGTTTGGGTTAACTGGAGCTTCAGTTTCCTTCCTGGTTATCATGTTTGGGTTTTGTTTTTGGTACACTAAATGGATGAAGAGGAACAAAATTGAAAATTTGCAAACCTTTGCTAATGATCTAGAGGAACAAAGGTCCAACTTTAGATTGAGACCACAGACAGGGTCCATTTGGTTCAAGTTTGAAGATCTTGACAAGGCCACTAACAAGTTTTCACCTCAGAATTTCATTGGTAAAGGTGGATTTGGGTCAGTTTACAAGGGCATTCTGCCTGATTGTGAAATTGTCGCAGTGAAAAGGATTGAAGAATCTGATTTTCAAGGAGATGCTGAATTCTACAGAGAGGTGGAGATTGTTAGCAGCTTGAAGCACCGCAATCTGGTGCCGCTAAGAGGGTGTTGTGTGGTTGATGAAGATGATAATCATGAGTACGGAAGGAAAACAAGGTATCTTGTTCATGATTATATGTCCAATGGTAGCCTTGAAGACCATCTCTTTCCACACTTGGACAGTGAAAATGAAAAGAAAACTCTGACATGGCCTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGGGTTGGTTTATTTGCACTGTGGAGTTAAACCTGCTATTTATCACAGAGATATCAAGCCCACCAATATATTACTTGATGCATGTATGAGGGCAAGGGTTGCTGATTTTGGACTGGCCAAACAGAGCAGTGAAAGCAGGTCTCAGCTAAATACTAGAATAGCAGGAACTCATGGATATTTAGCCCCAGAATATGCATTGTATGGTCAGTTAACTGAGAAGAGTGATGTCTATAGTTTTGGTGTGGTTATTTTGGAAATAGTGTGTGGAAGAAAAGCTCTTCAGTTGTCTTCATCTGGTACACCAGCTTTCTTGATCACAGATTGGGTTTGGTCATTGATGAAATCTGGTCACATAGAAGAGGCTTTGGATGCTTCTCTCATGATAGATGGAAATTCCTCATCTAGAAACATAATGGAGAGATTTTTGTTGGTTGGAATTCTTTGTTCTCATTTAATGGTTGCTTCCAGGCCAACTACTTTGGAGGTTTTGAAGATGTTAGAAGGGGACCTTGAGGTTCCATCAATTCCTGATAGGCCAATGACTCTTGGGCAACACATGTTTTCCAATGCTGATTCAACAGAATGGTGA 1899 0.4244 MAETAATHLNTSPFLSILTDLGSAAPSPSTNNSMCPVSMNYVLTVPWNTSTCQNFQPFPSKNQTQTSQCCQTLLSLFGIALAENLKRNSLFQLPNLPTSISCLQDFQFKLNSLSLPKTLASSCFDPLQFVITPNICAHIQSKQDWLNRLGPDNIALVNTACKPDLNVLTNCGACVDEGLKVLQKLTAMDGNTSHSNDCFYFTILYIAGVVNEFGPESTGTMSCALELPLNSDLSSRNKSHYHLALVFGLTGASVSFLVIMFGFCFWYTKWMKRNKIENLQTFANDLEEQRSNFRLRPQTGSIWFKFEDLDKATNKFSPQNFIGKGGFGSVYKGILPDCEIVAVKRIEESDFQGDAEFYREVEIVSSLKHRNLVPLRGCCVVDEDDNHEYGRKTRYLVHDYMSNGSLEDHLFPHLDSENEKKTLTWPQRKSIILDVANGLVYLHCGVKPAIYHRDIKPTNILLDACMRARVADFGLAKQSSESRSQLNTRIAGTHGYLAPEYALYGQLTEKSDVYSFGVVILEIVCGRKALQLSSSGTPAFLITDWVWSLMKSGHIEEALDASLMIDGNSSSRNIMERFLLVGILCSHLMVASRPTTLEVLKMLEGDLEVPSIPDRPMTLGQHMFSNADSTEW* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0824 632 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Lja4g0824 632 Gene3D Transferase(Phosphotransferase) domain 1 401 610 - -
Lja4g0824 632 Pfam Protein kinase domain 319 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0824 632 SMART serkin_6 316 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0824 632 Gene3D Phosphorylase Kinase; domain 1 277 400 - -
Lja4g0824 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Lja4g0824 632 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 616 - -
Lja4g0824 632 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 31 616 - -
Lja4g0824 632 SUPERFAMILY Protein kinase-like (PK-like) 296 604 IPR011009 -
Lja4g0824 632 Coils Coil 276 296 - -
Lja4g0824 632 ProSiteProfiles Protein kinase domain profile. 316 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0824 632 CDD STKc_IRAK 322 605 - -
Lja4g0824 632 Pfam SPARK 31 199 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0824 Lja-Chr4 6856667 6859676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0824 25 621 Receptor kinase-like Gene Family AT1G11050 58.872 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lja4g0824 Pkinase 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0824 - - lja:Lj4g3v2693570.1 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0824 4 6856667 6859676 Lja4g0824 4 6856667 6859676 ECH