Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0823 ATGAGATCTATGTCTATTTCTGTAGTTCTTGTCTTCATCTTTGTCGTGTCTTTAGATCCAGTTTTCTCACTGAATCTTGCACCCTCTCCTTCACCACCCTCTACCAATGAATCTACATGTCCAGTGTCCATGAAATATGTCCAAACTGTTGCTTGGAACTCCTCTTCCTGCCATAACTTCCAACCTTTGCAATCCAAAAAAGACACACATGAAACAATCTGTTGCCAAAACCTCTTGTACCTCTTTGGCATAGCACTAGCTGAAAATCTCAAGAAAAACTCTCTTTTCCAGCTCCATAACCTCTCCACCTCAATCTCTTGCCTTCAGGATTTCCAATCCAATATCTCTTCAATCTCACTTTCCAATAACCTTGTCAACTCTTGCTTTGAGCCAAGTGAGTTTGTCATCACTCCAAATTTATGTGCCCAGATTCAAACTAAGCAAGATTGGGTTAACAGGGTTGGTTCTGCTAACACAGAACTGGTTAACTCTGCTTGTGCAACAGACCTCACTGATGTTGCTCAGTGCAGAAAGTGTATGGCTGAGGGGGACAAGGTTCAGCAGATTCTGGTTTCCATTGATGGTAATCCTTCACATTCCCAAGATTGCTTTTACTTTCTAGTGCTTTATATTGCTGGAGTTGTGAATAGGTTTGGACCTCAGAGCCAAGGTGTTTTGTCTTGCATTTTTACTTTGTTGGTTAGTTCACATGAGGATTCCAGAGAGGAGCATGACCACCATGTTCTTGTGATTGCTTTAGCAGCTTCATTTGGATTATTTCTGTTCATCTTGTTAGGGTTGTGTTTTTGGTACTACACTAGGTGGGTGAAGAGAAAAAAATTTGAAAATTTGCTGGACTCTGGTGGTGGACCAGAGGAACTAAGGTTTAACCAGAGATTGAGACCGAACACTGGGTTGATTTGGTTCAAGTTTGAGGACCTTGTTAAGGCTACCAACAATTTTTCAGCTGAGAATTTTATTGGGAGAGGCGGGTTTGGGACGGTTTACAAGGGCACTCTACCTGATTGTAAAATTGTCGCAGTGAAAAGGATTGAAGAATCTGATTACCAAGGAGATGCTGATTTCTGCAGAGAGGTGGAGATTGTTAGCAGCTTGAAGCACCGCAATCTGGTGCAGCTAAGAGGGTGTTGTGTTGTTGATGAGGGTGAGAATTCTGAGTATAAAGGAAGGTATTTAGTTCTTGAATACATCCCAAATGGTAGCCTTAAAGACCATCTATTTCCAACAACCATGGATGATCCAAATGCAGTGAAATTGACTTGGCCTCAAAGGAAAAACATAATCTTGGATGTTGCAAACGCGTTGGTTTATTTGCACTATGGAGTTAAACCTGCTATTTATCACAGAGATATCAAACCCACCAATATACTACTTGATGCGGGTATGAGGGCAAAGGTTGCTGATTTTGGGCTAGCTAAACAGAGCAATACTGAAAATAAGTCTTTTCTAAATACAAGAATAGTTGGAACTCATGGATATCTAGCCCCAGAATATGCACTTTATGGTCAGCTAACTGAGAAGACTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGGTAATGTGTGGAAGAAAAGCTCTTGAGTTATCAGGAGCACCGACATTCTTGCTCACAGATTGGGTTTGGGCATTAATGAAATCTGGTCACATAGAAGAGGCTTTGGATCCTTCTATGTTAATAGATGGTAACTCTACTAGGAACATAATGGAGAGGTTTTTGCTTGTTGGAATACTATCTTGTCATGTATTGGTTGCTTCAAGACCAACAATTTTGGAAGCTTTGAAGATGTTAGAAGGGGATATTGAGGTTCCACCAATTCCAGATAGGCCAATGACTCTAGGGAATTATATGTTTTCAAAGGGTGATTGTTTGGGGATGAGCTCAGATTGTGATGTTAATGGTTGTAGAATCCACCCTTGA 1941 0.4086 MRSMSISVVLVFIFVVSLDPVFSLNLAPSPSPPSTNESTCPVSMKYVQTVAWNSSSCHNFQPLQSKKDTHETICCQNLLYLFGIALAENLKKNSLFQLHNLSTSISCLQDFQSNISSISLSNNLVNSCFEPSEFVITPNLCAQIQTKQDWVNRVGSANTELVNSACATDLTDVAQCRKCMAEGDKVQQILVSIDGNPSHSQDCFYFLVLYIAGVVNRFGPQSQGVLSCIFTLLVSSHEDSREEHDHHVLVIALAASFGLFLFILLGLCFWYYTRWVKRKKFENLLDSGGGPEELRFNQRLRPNTGLIWFKFEDLVKATNNFSAENFIGRGGFGTVYKGTLPDCKIVAVKRIEESDYQGDADFCREVEIVSSLKHRNLVQLRGCCVVDEGENSEYKGRYLVLEYIPNGSLKDHLFPTTMDDPNAVKLTWPQRKNIILDVANALVYLHYGVKPAIYHRDIKPTNILLDAGMRAKVADFGLAKQSNTENKSFLNTRIVGTHGYLAPEYALYGQLTEKTDVYSFGVVVLEVMCGRKALELSGAPTFLLTDWVWALMKSGHIEEALDPSMLIDGNSTRNIMERFLLVGILSCHVLVASRPTILEALKMLEGDIEVPPIPDRPMTLGNYMFSKGDCLGMSSDCDVNGCRIHP* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0823 646 Pfam Protein kinase domain 323 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0823 646 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Lja4g0823 646 ProSiteProfiles Protein kinase domain profile. 321 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0823 646 Gene3D Phosphorylase Kinase; domain 1 293 403 - -
Lja4g0823 646 SUPERFAMILY Protein kinase-like (PK-like) 301 605 IPR011009 -
Lja4g0823 646 SMART serkin_6 321 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0823 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Lja4g0823 646 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 37 622 - -
Lja4g0823 646 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 622 - -
Lja4g0823 646 Gene3D Transferase(Phosphotransferase) domain 1 404 610 - -
Lja4g0823 646 Pfam SPARK 35 204 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0823 Lja-Chr4 6852830 6855070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0823 26 645 Receptor kinase-like Gene Family AT1G11050 53.895 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lja4g0823 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0823 - - gmx:100788367 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0823 4 6852830 6855070 Lja4g0823 4 6852830 6855070 ECH