Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0805 ATGTTTTTTTTCTTTCTAGGATTTGGATCGTGGTTATCAGGATCCCAAAACCATCAATGGTGGAGACAACCCAACTCAAGAAGAAAGAACAACCAACCTAGAAAAGAACAAAAAAAAAGTAAAAAACCACTAGAGCCTGTAGACAAAACCCCAAATGAATATAAAATGTTTTTTCAAAGTGGAAAATGTTCAGAATATTTGAATATTCAGAAGAATTATTTTTTTGAAAAAATTACAATGATATATACAATGTTGCAGACATCATCCATATGGAATCCATCTAGAGCACGTCGGCCTGAAATTGATGAAGCACCTGTGTTTTATCCGACAATTGAGGAGTTTCATGACCCTCTTGGTTACATAGCTAAGATCCGTCCCCAAGCAGAACACAATGGAATATGTAAGATTGTGCCTCCTACTAGCTGGGTTCCACCATGCCCTGTTAAAGAGAAAGACTTGTGGGAAAATTTAAAGTTTCCCACCCGAATTCAACCAATTAACTTTCTTCAGCATAGAGAGTCTATGAGGAAGAAAGGCAAGGGGAGGAAACGAAAACGTGGAAGACCAAAAAAGATAGACACAAACAGGAAAACAGGAAATGCAAGTTATAAAGCCAATGTTGTTTTAAAACCTGACGATGAGAGGTTTGGCTTCCAATCAGGGCCAGACTTCACAGTAAGAGAATTCCATCATCAAGCAAACGCTTTTAAAAATAGCTATTTCATGGTCAATCCTGCTCATCATGATGATGGAGAAGATAGTCGAAACAAGCAGCAGAAGAGACGGGAGCCTTCTGTGGAGGAAATCGAAGGCGAATATTGGCGAATAATTGAGGAACCAACTGATGTTGTTGAGGTGTATTATGGAACTGACTTGGACATTGGATCAGTTGGAAGTGGTTTTCCTAAGACATCTTCATCAACTAAGAGTAATACAAATCAACACACTGTGTCAGGAGGATGGAATCTGAATAACTTGGCGGGATTGCCGGGTTCTACACTATGTTATGAAAACAATGATATCCCGGGAGTTATTGTTCCCTGGATGTACATTGGAATGTGCTTTTCAACATCTTGTTGGCATGTTGATGATCATCACCTATACTCACTTAATTATCTGCACTCGGGTGACCCAACAGTATGGTATGGTGTACCTGGGAGCCATGCTACAGCTCTAGAAGAAACTGTGAAGAAAGAGTTGCCTGAATTATTTGCAGCACAACCTGATCTACTCAATGAGCTGGTGACACAGTTTACTCCTTCAATTCTTACATCGGCGGGGCTGCCTGTATACCGCATTGTTCAGAATCCAAGGGAATTCGTTCTCACCTTCCCAAGGGCATATCATGGTGGCTTCAGCTGTGGCTTCAACTGCTCAGAGGCTGTCAATGTGGCTCCTGTTGATTGGTTCGTGCATGGCCAGGTTGCTGTTGAGCTTTACAGTCAGCAATGCCGCAAGACATCATTGTCTCATGACAAGATGTTGTTCAGAGCTGCTGAGGATGCCGTCCTTGCCCTTGCAGAGAAAACTCTTCATGGAAAAGAAACTCTGAGGTATTTGAAATGGAAAAGTGCTTGTGGAAAAGATGGAGTTCTTACTGATGCAGTTAAGACAAGGATGGAGATGGAAAGAGGGAGGCTTCTGTCTCTTCCCATTCATTTAACGACGATGGCGAAGATGGACAATCGCTATGATTTGCTTGAGGAAATAGAATGCATCTCTTGCTTCTATGACTTGCACCAATCTGCCATTGGTTGCCAGTGTTCTCCTGATAGATATTCTTGTCTTCAACACTCAAACAAGCTTTGCAAATGTGAAATGGACAAAAAAGTTATCCTGTATCGTTATACTTTGAGCGAGATATCTTCTTTGGTTGCAGCATTAGAAGGAGAAAAACATGCAATTGAAGCATGGGCTAAAAGAAACCCTGGAGACCAGTCTGCTAATGTTGAGGATGAACAACACATGGAGAGAGCCAAGTGCAAAAACAAGAATAAAGAAAAAGGGGAAAGCTCAACTTTTCTTGCAGGAACTAGTGAGAAGTATAATCCAAATGCAGTTAGCAGTTCTTACAACCATGTTTCTTCAGAGTTGGTACCTCCTGGTTCTCATCATGAACCTCTCAGCACACGAGATGGGGTTATAGATTTCCATAAGAACAACGTAAAAGATAAAAAATTGGCCATGGACAATGAAATTAGGGAGGTGCAGAGAAGATCTGTGGGTTCGTATATTGACCTCACTTCTGATGAACCTGATAACGATCACTTTAAGGGCCTAATTGAATCTGCTTATGAAGCTGTTAATCTTGTAAGTTTGGGCTCTGTTATGTTTGGAAAGCTCTGGAGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGCCGTTTTATGTTCTTTAGCACTTTAGATCCAGCAAACCTATGTGACTATGTTTGTGAAGTCATTGATGCTGGACTTCTTGGGCCTGTTTTCAAGGTTACAATGGAATTACACCCAAATGAGACATTCACACAGGCTTCAGCAGATAAGTGCTGGGAGACAGTTCTGAATAAACTAATTCATGAAATCAAGAGGCGAGAGAGTCTAGGTGAAGAAGCACTTCCTCCCTTAGAACTTCTGCAAAGCACCAATGGTCATAAAATGTTTGGATTCCTTTCTCCACCCATTATTCAGTCAATTGAAGCTCTAGATCCTGGTCATAAATGTGTGGAGTACTGGAACCACAAAGGAGCAATTTCTGAATCTTCAGGCAGGGCCATTGATGCCTCTACGAGTAAGGCTCCTCATGGCTCTAGTAACTCTACACAAGGTGTCAGTACCACCAAACTTTTTGGTGTCACTTTGGTAAAGCGGGAGGAGGATGACATGGTACAAGGTTCTTCTCATTCCTCTGAAGAGAACAAGTTGAGGCTACAAGGGTTGTTGAAAAAGGCAAGTCCTGATGAGTTAAGTTCCATGCATCAGTTATTCAGCTCTGATGCAGAGTTAACTCAATCTAGAGTGGAAATTGTGAAGCAGATAGATGGAATCCAGAAATCTCGTGCATAA 3051 0.4133 MFFFFLGFGSWLSGSQNHQWWRQPNSRRKNNQPRKEQKKSKKPLEPVDKTPNEYKMFFQSGKCSEYLNIQKNYFFEKITMIYTMLQTSSIWNPSRARRPEIDEAPVFYPTIEEFHDPLGYIAKIRPQAEHNGICKIVPPTSWVPPCPVKEKDLWENLKFPTRIQPINFLQHRESMRKKGKGRKRKRGRPKKIDTNRKTGNASYKANVVLKPDDERFGFQSGPDFTVREFHHQANAFKNSYFMVNPAHHDDGEDSRNKQQKRREPSVEEIEGEYWRIIEEPTDVVEVYYGTDLDIGSVGSGFPKTSSSTKSNTNQHTVSGGWNLNNLAGLPGSTLCYENNDIPGVIVPWMYIGMCFSTSCWHVDDHHLYSLNYLHSGDPTVWYGVPGSHATALEETVKKELPELFAAQPDLLNELVTQFTPSILTSAGLPVYRIVQNPREFVLTFPRAYHGGFSCGFNCSEAVNVAPVDWFVHGQVAVELYSQQCRKTSLSHDKMLFRAAEDAVLALAEKTLHGKETLRYLKWKSACGKDGVLTDAVKTRMEMERGRLLSLPIHLTTMAKMDNRYDLLEEIECISCFYDLHQSAIGCQCSPDRYSCLQHSNKLCKCEMDKKVILYRYTLSEISSLVAALEGEKHAIEAWAKRNPGDQSANVEDEQHMERAKCKNKNKEKGESSTFLAGTSEKYNPNAVSSSYNHVSSELVPPGSHHEPLSTRDGVIDFHKNNVKDKKLAMDNEIREVQRRSVGSYIDLTSDEPDNDHFKGLIESAYEAVNLVSLGSVMFGKLWSSKHAIYPKGFKSRFMFFSTLDPANLCDYVCEVIDAGLLGPVFKVTMELHPNETFTQASADKCWETVLNKLIHEIKRRESLGEEALPPLELLQSTNGHKMFGFLSPPIIQSIEALDPGHKCVEYWNHKGAISESSGRAIDASTSKAPHGSSNSTQGVSTTKLFGVTLVKREEDDMVQGSSHSSEENKLRLQGLLKKASPDELSSMHQLFSSDAELTQSRVEIVKQIDGIQKSRA* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0805 1016 SUPERFAMILY Clavaminate synthase-like 337 502 - -
Lja4g0805 1016 Pfam jmjN domain 105 138 IPR003349 -
Lja4g0805 1016 MobiDBLite consensus disorder prediction 246 267 - -
Lja4g0805 1016 MobiDBLite consensus disorder prediction 170 200 - -
Lja4g0805 1016 SMART JmjN_1 103 144 IPR003349 -
Lja4g0805 1016 ProSiteProfiles JmjC domain profile. 318 481 IPR003347 -
Lja4g0805 1016 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 771 1014 - -
Lja4g0805 1016 ProSiteProfiles FYR domain FYRN motif profile. 760 818 IPR003888 GO:0005634
Lja4g0805 1016 SMART cupin_9 318 481 IPR003347 -
Lja4g0805 1016 Pfam JmjC domain, hydroxylase 348 464 IPR003347 -
Lja4g0805 1016 Pfam F/Y rich C-terminus 822 908 IPR003889 GO:0005634
Lja4g0805 1016 Coils Coil 719 739 - -
Lja4g0805 1016 MobiDBLite consensus disorder prediction 644 681 - -
Lja4g0805 1016 Pfam C5HC2 zinc finger 572 623 IPR004198 -
Lja4g0805 1016 MobiDBLite consensus disorder prediction 646 669 - -
Lja4g0805 1016 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 87 756 - -
Lja4g0805 1016 MobiDBLite consensus disorder prediction 243 267 - -
Lja4g0805 1016 Gene3D Cupin 89 465 - -
Lja4g0805 1016 PANTHER LYSINE-SPECIFIC DEMETHYLASE 87 756 - -
Lja4g0805 1016 MobiDBLite consensus disorder prediction 918 939 - -
Lja4g0805 1016 MobiDBLite consensus disorder prediction 21 48 - -
Lja4g0805 1016 ProSiteProfiles JmjN domain profile. 104 145 IPR003349 -
Lja4g0805 1016 Gene3D - 764 904 - -
Lja4g0805 1016 SMART fyrn_3 774 818 IPR003888 GO:0005634
Lja4g0805 1016 Pfam F/Y-rich N-terminus 768 815 IPR003888 GO:0005634
Lja4g0805 1016 PANTHER LYSINE-SPECIFIC DEMETHYLASE 771 1014 - -
Lja4g0805 1016 SMART fyrc_3 824 916 IPR003889 GO:0005634
Lja4g0805 1016 MobiDBLite consensus disorder prediction 175 192 - -
Lja4g0805 1016 ProSiteProfiles FYR domain FYRC motif profile. 820 910 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0805 Lja-Chr4 6693153 6700542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0805 91 950 JUMONJI Transcription Factor Family AT1G30810 47.796 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja4g0805 JmjC 2.8e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0805 - - fve:101313684 878.241