Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0803 ATGCAGAGCCAACTTGTGTGTAATGGTTGTAGGAGCATTCTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATCACCGCTGTGCCTCCACCCGGAATGGATATGTCTCAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGTGGAGCTGCTAGTGTCAGATGTTCCTGCTGTCACACTGTAAACCTTGCTCCAGCTAATCAAGTTGCCCACGTCCCTTGTGGGAATTGCCGGACAACCCTCATGTATCCATATGGAGCTCCCTCAGTCAAATGTGCTCTTTGTCACTATATTACTAATGTCAATATGTCCAATGGAAGGCTTCAAGTTCCTATGCATAGACCTAATGGGACGACCAACTCTGGAGCATTACCTTCTACTTCAACGTCAATGCCCCAATCTCAGACCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTTAGCAATGTTGTTGTTGGCGTCACAACAGATAAGAAATGA 528 0.4545 MQSQLVCNGCRSILLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRGAASVRCSCCHTVNLAPANQVAHVPCGNCRTTLMYPYGAPSVKCALCHYITNVNMSNGRLQVPMHRPNGTTNSGALPSTSTSMPQSQTQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0803 175 PANTHER LSD1-LIKE PROTEIN 1 173 - -
Lja4g0803 175 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Lja4g0803 175 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 80 109 IPR005735 -
Lja4g0803 175 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Lja4g0803 175 Pfam LSD1 zinc finger 7 31 IPR005735 -
Lja4g0803 175 Pfam LSD1 zinc finger 83 107 IPR005735 -
Lja4g0803 175 Pfam LSD1 zinc finger 46 70 IPR005735 -
Lja4g0803 175 PANTHER PROTEIN LSD1 1 173 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0803 Lja-Chr4 6660281 6671985 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lja4g0803 zf-LSD1 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0803 - - mtr:MTR_8g089310 336.265