Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0787 ATGGGAAACTTAGACCCCACGGCGGAGGAGTTCAAGCCGAGAAGAAACCCTAACCACTTACCCTTACCCCCACCCCCACCCCCACCCCCAACGACACCGTTTCCGTATCCATACTCCTATTATCCATTCGCTGTTTCCACCTACTCTTACGCCGGAGGATACGAACCGCTGCCGTACCCGCCGTTTTGTTACGGCGAGCCTCTTCCGTACCCGCCGCCGGCACACATTCCCTCTACGCCGCAGCCGCCGCTGTTACCGACGCGGTCGTTGCTGCTGAGTTTCTTTCCGCCGGAGGCTGCGGCGGCGGTTACAGAGTCGTCGGTGAGGAGGCAGCTGGAGATTTTCGGCGACGTGAGAGGGGTTCAGATGGAGAGGCGCTGCGAGGGGACGGTTATCGTTCACTTTTATGACCTCAGACATGCGGAGACGGCGTTGGCGGCGATTCGGTTGCAGCAGCAGACGAAGCTGCTTAACCCGCCGGCGCGTGGGGTTGCTTATGGTTGTGATGTTTGGGCGCAGTTCACGCTCCCGGCGCGTGATGCTGTTCCTGAAGGGCAGAACCAAGGGACTGTCGTGGTTTTCAATGTGGATTGGGACGTGGAACCAGAGACTCTCCGGCAAATCTTTGAGGATTTCGGTCCCATAAAGGAAATCAGACACCCCCAAACAAAAAAGAGCCAGAGGTTCGTGGAGTTTTTTGATATCAGAGATGCTGCAAATGCTTTGGAGCACATGAATGGAAAAGAAATTCATGGGAGACCTGTTGTTATTGAATTCAGTCGACCAGGAAGGAAGTTCTTCCAGGTTTCTGCTGCTTCTCCATTCTCCAAGTCGTTTTGTCCTTCCCCTCCACCATTGCAACCGAGATTCTGGCCTCCTTTTGCTCCTCATCATGCTGCTGCTTTTAGTTCTCAACCTCAATTATCTTCAAGCAAAACTTCCATGGGAAACCATGATAGCAGAGTAGCCATGGCTTCCATTCATTCGGGTGAGGATTTTCAGAATGGGGTTGAAGATGGGCATCACTCTCATGGGCCTCCCAATAGAAGTTTTGTGAAGACACACAGCAGGGATTCCTCTGTTGAAAGTATGAATCAGCTTCAAGGTAGAAGCAACAGGCCTTGCAGGGGGAGGCAAGCAAGGCATGATGAAACCCGATTTTTAATTCAGGAAGATGCTGCTTCCCAGTCTGGTTGCATAGATTCCAGAACTACTGTGATGATAAAAAACATACCCAACAAGTACAGCCAGAAGCTACTGATGAACATGTTGGACAACCACTGCATCCACTACAATGAGCAGATTGGAGATGACCAGATTTTGTCATCCTACGACTTCTTGTACCTCCCCATTGATTTCAACAACAAGTGCAATGTGGGATATGGGTTTGTGAACATGACCTCTCCTGAGGCAACCCTGAGGCTCTACAAGGCTTTCCACCATCAACCCTGGGAGGTGTTCAATTCAAGAAAAATTTGTGAGGTGACCTATGCTAGAGTTCAGGGATTGGAAGCGTTGAAAGAGCATTTCAAGAACTCCAAGTTCCCATACGAGATAGAGCACTACCTGCCAGTGTATTTTTCACCTCCTCGAGACGGGAAGCAAGTGACAGAGCCACTTCCAATTGGTCAAAGTAACAAGCACTCACGAAGCTTTTCCATTGGTTCGCATAGCCATATGGTAGGGACTTCTTCTGAGGACTTGATTAACCACCAAAACGGCAGCGTTGAAGGTGATGATGAGGATAATGGATGTGGATTGAGTTGA 1767 0.5031 MGNLDPTAEEFKPRRNPNHLPLPPPPPPPPTTPFPYPYSYYPFAVSTYSYAGGYEPLPYPPFCYGEPLPYPPPAHIPSTPQPPLLPTRSLLLSFFPPEAAAAVTESSVRRQLEIFGDVRGVQMERRCEGTVIVHFYDLRHAETALAAIRLQQQTKLLNPPARGVAYGCDVWAQFTLPARDAVPEGQNQGTVVVFNVDWDVEPETLRQIFEDFGPIKEIRHPQTKKSQRFVEFFDIRDAANALEHMNGKEIHGRPVVIEFSRPGRKFFQVSAASPFSKSFCPSPPPLQPRFWPPFAPHHAAAFSSQPQLSSSKTSMGNHDSRVAMASIHSGEDFQNGVEDGHHSHGPPNRSFVKTHSRDSSVESMNQLQGRSNRPCRGRQARHDETRFLIQEDAASQSGCIDSRTTVMIKNIPNKYSQKLLMNMLDNHCIHYNEQIGDDQILSSYDFLYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHHQPWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPYEIEHYLPVYFSPPRDGKQVTEPLPIGQSNKHSRSFSIGSHSHMVGTSSEDLINHQNGSVEGDDEDNGCGLS* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0787 588 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 262 IPR000504 GO:0003723
Lja4g0787 588 PANTHER TERMINAL EAR1-LIKE 1 31 567 - -
Lja4g0787 588 CDD RRM3_EAR1_like 403 502 IPR034458 -
Lja4g0787 588 Pfam RNA recognition motif 2 403 511 IPR007201 -
Lja4g0787 588 MobiDBLite consensus disorder prediction 1 28 - -
Lja4g0787 588 MobiDBLite consensus disorder prediction 569 588 - -
Lja4g0787 588 Gene3D - 175 266 IPR012677 -
Lja4g0787 588 SMART rrm1_1 190 258 IPR000504 GO:0003723
Lja4g0787 588 MobiDBLite consensus disorder prediction 332 379 - -
Lja4g0787 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 255 IPR000504 GO:0003723
Lja4g0787 588 SUPERFAMILY RNA-binding domain, RBD 183 266 IPR035979 GO:0003676
Lja4g0787 588 MobiDBLite consensus disorder prediction 539 557 - -
Lja4g0787 588 SUPERFAMILY RNA-binding domain, RBD 356 492 IPR035979 GO:0003676
Lja4g0787 588 PANTHER RNA BINDING PROTEIN 31 567 - -
Lja4g0787 588 MobiDBLite consensus disorder prediction 349 373 - -
Lja4g0787 588 MobiDBLite consensus disorder prediction 534 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0787 Lja-Chr4 6518843 6521578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0787 191 308 Eukaryotic Initiation Factors Gene Family AT2G23350 30.714 4.28e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0787 - - lja:Lj4g3v2717080.1 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0787 4 6518843 6521578 Lja4g0787 4 6518843 6521578 ECH