Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0782 ATGGCAATGAGGGCAGCAGTGGCGGCACCGCGCGGCTTACGGCGGCTTTTCTGCACGAACTCGACCTCTCCTTCTTCCCCTTTCACTCTAACAGGCCCTCCAACCACCCGACAGATGGGTGAGCCCAGCACCAACCTCTTCGTGTCCGGGCTCAACAAGCGTACAACAACAGAAAAGTTACGGGAAGAATTTGCAAAATTTGGTGAAGTTGTTCATGCAAGGGTGGTAACTGATCGAGTCTCAGGTTACTCCAAGGGTTTTGGTTTTGTGAAATATGCAACTATTGAAGAGGCCAGTAAGGGCATTCAAGGCATGGATGGCAAGTTTTTGGATGGATGGGTTATATTTGCAGAGTATGCAAAATCAAGTCCAGCACCTGGACAACAACCTGCAAACAATATGACAAATCCTTATGCACGGCAGTAG 426 0.4906 MAMRAAVAAPRGLRRLFCTNSTSPSSPFTLTGPPTTRQMGEPSTNLFVSGLNKRTTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEYAKSSPAPGQQPANNMTNPYARQ* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0782 141 SMART rrm1_1 45 118 IPR000504 GO:0003723
Lja4g0782 141 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 137 - -
Lja4g0782 141 MobiDBLite consensus disorder prediction 20 47 - -
Lja4g0782 141 SUPERFAMILY RNA-binding domain, RBD 30 132 IPR035979 GO:0003676
Lja4g0782 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 112 IPR000504 GO:0003723
Lja4g0782 141 Gene3D - 35 141 IPR012677 -
Lja4g0782 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Lja4g0782 141 PANTHER TRANSFORMER-2-RELATED 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0782 Lja-Chr4 6489777 6492320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0782 43 125 Eukaryotic Initiation Factors Gene Family AT1G49760 33.735 5.07e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0782 - - gmx:100789351 210.305