Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0774 ATGTTAGGAGAAGAGGGTAACGGCGGCGGTGGCGGCGGTGGCGCTCCCCGGAGACCATACCCGCGTTCAGTTTCCTGGACCGACCGGAAGCTGCTGGCGCGCAACAGACCGAGACCGTCTCTTCCGCCGCTTCAGCCTCTGTCCATCACCCGCCGCAGCGTGGAGGACTGGCCGAGCGCCGGATCTGACGATCTCGGCGTTTGGCCGCAGCAGGCACAGACTCCGAGAGGGACTTCACCCGCCTCTGACCCGGGTCGACCCGGGTTGGAATTCGAGTTCCAGAAGGACAAGCTCGCGTTCTACGACAAGGAGTGTTCGAGGATCGCGGAGCACGTGTATCTCGGAAGCGACACGGTGGCGAAGAACCACGGGCTTCTCCGGCAGAATGAAATCACGCACGTGCTGAACTGCGTCGGGTTCGTGTGCCCTGAGTATTTCAAGAGCGAGTTCGTCTACAAAACGCTCTGGCTTCATGATTCCCCATCAGAGGACATCACCAGCATCCTGTACGATGTTTTCGATTACTTTGAGGATGTTCGTGAACAGAAGGGGCGTGTCCTCGTACATTGTTGTCAAGGGGTGTCTCGATCAACCTCTCTGGTGATAGCATACCTCATGTGGAGGGAGGGGCAGAGTTTTGAAGATGCGTTTCATTATGTGAAGAATATGAGGGGTGTCACCAATCCAAACATGGGTTTTGCTTGTCAACTTCTTCAGTGTCAGAAGAGGGTTCATGCTTTACCTGCTAGTCCTAATTCTATTGTGAGAATGTATAGAATGGCTCCTCATTCTTCTTATGATCCTCTTCATTTGGTTCCTAAGTTGGTGACTCATCCTAGTGCTAAAGCACTTGATTCTCGTGGGGCTTACATTGTTCATGTTCATGTTCCTTCTGCTATTTATGTGTGGATTGGGAAGCATTGTACCTCTGCCATGGCTTGTAATGCGAAATCGGCAGCCGTTCAGGTTATTCGATACGAGAGGGTGACCGGTTCGGTTCACAACATTGATGAGGATGAAGAGCCACTGGAGTTTTGGGCTGCTCTTTCTAATTATCAGCAATTTGGAGATGTCAAGAAGGATGTTGAAAGAATGGAGATTGATGTTGAAATTGATACCGGAATTCGTCCCAGGAACGTCGAGGAGTATGATTTGGATTTTGAGATTTTCAACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCTCTGTCTGATGTTGCTGGATCAGAAACTTGTCTTCCTGCTAGAGAAGTTGGTTGGGGGAGACTGAGAAGGAAGCTTGCTAGTGGTATCATGAAAGGGCTGTTCAATTCCCCTAAATGCAGTGACACAACCTCATCCAAAGATGAATCAGGTGTGAAAATGGATGAGGAAAATCAGCATCCTGTGGTTGATCTTGATCCTTTACCGCCATCCTCAAAAAACCATGTTTGTGATGGTTCATCAGAGTACTGTGAACTTGTTGCTAGGGTTGATTCATCCCTGCCACCATCAGATTCTTTTCCTAGTATCCTAAGAAGCAGCCAAAAATTCAGTTCCAAGGCACCAACAATTTCTCCTAACAGTTCTGAGTGTGCCAGTTCTTTTACATCTTCACCTTCCTCTCAGCAGCCATCACTATCTGAATCAACTGAACCCTTTTGCTTCAAAGATGTGGCTTTCTCTGAAAGACCCTCTTCACTTCACAATTCATCTTCAGGTGCATTTTTAGCTAACAAAGGATCTGCCCCCTCAATTGCAGAGCGCAGAGGGAGTAAACCGCCTCGCATGTTGCTTCGTTCAGCCAGTGAATCAGAAAACGCCCGCAGGATCGTAAGATCACAGTCATTTGCTTTGCCTGACATGGATGGTGACTTGATGAAGAATGTTAGTTGCAAGAAATCTGATGGTGAACAGAAAGGAAATTAG 1911 0.4861 MLGEEGNGGGGGGGAPRRPYPRSVSWTDRKLLARNRPRPSLPPLQPLSITRRSVEDWPSAGSDDLGVWPQQAQTPRGTSPASDPGRPGLEFEFQKDKLAFYDKECSRIAEHVYLGSDTVAKNHGLLRQNEITHVLNCVGFVCPEYFKSEFVYKTLWLHDSPSEDITSILYDVFDYFEDVREQKGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNMRGVTNPNMGFACQLLQCQKRVHALPASPNSIVRMYRMAPHSSYDPLHLVPKLVTHPSAKALDSRGAYIVHVHVPSAIYVWIGKHCTSAMACNAKSAAVQVIRYERVTGSVHNIDEDEEPLEFWAALSNYQQFGDVKKDVERMEIDVEIDTGIRPRNVEEYDLDFEIFNKALAGGVVPPFSLSDVAGSETCLPAREVGWGRLRRKLASGIMKGLFNSPKCSDTTSSKDESGVKMDEENQHPVVDLDPLPPSSKNHVCDGSSEYCELVARVDSSLPPSDSFPSILRSSQKFSSKAPTISPNSSECASSFTSSPSSQQPSLSESTEPFCFKDVAFSERPSSLHNSSSGAFLANKGSAPSIAERRGSKPPRMLLRSASESENARRIVRSQSFALPDMDGDLMKNVSCKKSDGEQKGN* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0774 636 CDD DSP 105 239 - -
Lja4g0774 636 MobiDBLite consensus disorder prediction 621 636 - -
Lja4g0774 636 PANTHER MKPA PROTEIN 34 601 - -
Lja4g0774 636 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 224 IPR000387 GO:0016311|GO:0016791
Lja4g0774 636 MobiDBLite consensus disorder prediction 562 636 - -
Lja4g0774 636 Gene3D Severin 255 356 IPR029006 -
Lja4g0774 636 MobiDBLite consensus disorder prediction 1 88 - -
Lja4g0774 636 MobiDBLite consensus disorder prediction 448 464 - -
Lja4g0774 636 MobiDBLite consensus disorder prediction 440 473 - -
Lja4g0774 636 MobiDBLite consensus disorder prediction 512 543 - -
Lja4g0774 636 ProSitePatterns Tyrosine specific protein phosphatases active site. 188 198 IPR016130 GO:0016311|GO:0016791
Lja4g0774 636 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 99 245 IPR029021 -
Lja4g0774 636 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 34 601 - -
Lja4g0774 636 ProSiteProfiles Dual specificity protein phosphatase domain profile. 104 246 IPR020422 GO:0006470|GO:0008138
Lja4g0774 636 SUPERFAMILY Actin depolymerizing proteins 250 352 - -
Lja4g0774 636 Gene3D Protein tyrosine phosphatase superfamily 89 246 IPR029021 -
Lja4g0774 636 Pfam Dual specificity phosphatase, catalytic domain 112 242 IPR000340 GO:0008138|GO:0016311
Lja4g0774 636 MobiDBLite consensus disorder prediction 66 80 - -
Lja4g0774 636 SMART dsp_5 104 243 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0774 Lja-Chr4 6440089 6442668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0774 35 140 Protein tyrosine phosphatase (PTP) family AT3G55270 45.378 1.65e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0774 - - lja:Lj4g3v2728260.1 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0774 4 6440089 6442668 Lja4g0774 4 6440089 6442668 ECH
Lja4g0774 4 6440089 6442668 Lja6g0212 6 4248396 4251195 PCT