Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0765 ATGGAGTATTTCGGGGACTCGGTTTGCTACGATGCTTCGGTCGGAGATGAGGTTCTACAGGAGTTGTCCTTTTTTGATGAAAATGAAGCTGAAGCTGAAGCTGAAATAGAAATTGAGTATGTAGATAAGGCTTCTAATGCTGATGATGCTGTTGATGAGCTGAATTTTTTTAGCGATGAACTTAGTAGCTCTGAACAAACGGGTGCTCCACGTGGTAATGAGAATACAATGGATACAGTAGAGGTCAATTGTGTTGCTGACATTTGTGCCATTGACATGAAGACTTTTATCCCAGTTCAAGTTGGAAGATACGATTTTCAGAGCTTGGAGGTTGCATACATGTTTTATGCCCATTTTGCTCGTGCTAAAGGTTTCTGTGTTAGAAGATATAACGTAATAAGAAGTAGGAAGACAAGCGAAATACTGCAACAGGAATTTGTTTGCAACAAGAATGGCAAGAGAGAAGACAGAGGGCTATCTTCTGAACAACGAAAGCGCACCCCGAGGAGAGACACAAGATGTGGGTGTAAAGCTATGTTTCGGGTACATGTTGATATAACAACCACTCGCTGGTATTGCACCTGGTTTACCAACGATCATAATCATGACTTATTTGATGATGTTGATTGCGGATTGCAAGCTCCACATAGAAAGCTTAGTTTGAGCGACATAGTTCAGCTTAATGGAATGAAGGATATTGGCATGGGTGTCCCTCACATGTGGCGTGCTTTTGCAACTCAATGTGGAGGCTTTGAGAATGTTCCTTTCACAAAAAGATCTGTATATAACCAAATTGGGAAGCAAAGACAAATGCAAAACAGTGATGCTTCTTCATCAATTCAGTTCATTGGTAAATTGAGTTCTAATGATAGCGAGATGTATTGGGAGCGCACAATAGATAATGATCGAAGACTTCAACATCTATTTTGGTGCGATGGCATTAGTCGTTTGAGTTACAAGGTTTACGGTGATGTGCTAGCCTTTGATGCAACCTATTCAAAGAATAAGTATTTGTTGCCTGTAGTGATTTTCTCTGGAGTAAACAACCATAACAGGACAACCATCTTTGCTACTGCTGTTGTTGCTAATGAAACGGAAGAAACTTATGTGTGGCTGTTGGAGCATTTCCTGAGGGCAATGGATGGTAAACATCCAAAAGCTGTTATAACAGATGGTGCAGTAGTGATGAAAAATGCAATTCAAAGGGTGTTTCCTAATGCACATCATAGATTGTGTGCTTGGCATCTCCTCTGTAATGCGAATACTAATATTGGAAACCCGCTGTTTACTCAAGCTTTCAGGTGGTGCATGTTTGGTGACTATGACATAGGGAAATTTCAAAAAAAATGGGATGAAATGGTTGCAAAGTTTGGATTGCAAAACAACAAATGGGTTAAAGGCTTGTATGATACTAGGAAGAAGTGGGCCTCGGCTCACTTGCGAGGTAAATTCTTTGCTGGATTCCGGACTACCTCTAGATGTGAGGGGTTGCATTCTGAACTTGGAAAATTTGTCCATTCGCGTCAGAACTTGACTGATTTCTTAGTACAGTACCACCACTGTTTGAAGCATATGCGTTTTAGAGAAGTTTCAGATGATTTTCATTCCATAGATGGGAATCCGGTTCCACAAACTAAGATGGAAGCGCTTGAGATGTCAGGTGGGAAACATTTTACTAATGCTATTTACCTGTTGTATGTCAGTGTTATTAAACAGGCTACTATGCTGAAGGTGTTACAATGCCATGAGGCATTAACATGCACCATTTATACTGTTGCGAAGCTAATTTCAGGGGTTAAGGAGTGGCATGTTTCAGTTTATGTAGAACCAAGTGACTACAAATGTTCATGTATGAAAATGGAGTCACGTGGGTTACCATGTGAGCATATACTTGCTGTTTTACACCATTTGAAGGTTGAAGAGTTGCCAGGGTGCCTTATAATGAAAAGATGGACAAAAGGTGCAAAGGATGGTGTGTACAGTGCAAAGGGTGTTGCGGGTCACATCTGGGACTCACAGAAAAGTGCCCGCTGTGGAGCTCTGATGGATTTATACAGAGTTTTGAGTGAACTAAATTCGGATACCCTTGAAGATTTCAATAATGCAAGGAATATTGCTAATCAGCAAATTGAGTTGGGTCGAGCAAAGAGATCTTGTCAAATAGGGGATGTATCAAACAACAAAAATGATTTTGCTATGGTAAGGGATCCTGTGCGTATCAGGTCAAAGGCGCGTGGTGGAAAGGGTGCATCGTCTTCGGGAGTGAGAGCCAAACGTGTATTGAATTGTTCTTTGTGTAAGCAACCAGGTCATAACGAGCTTACGTGCACATTCCTTACAACAGGTGGTGAATCCTTGGTCCACATGGGAAGTAGTGAATCTGAATATGACCTGTTTAGTGCAGAAGACCTCAATGTTGACGATTGA 2427 0.4112 MEYFGDSVCYDASVGDEVLQELSFFDENEAEAEAEIEIEYVDKASNADDAVDELNFFSDELSSSEQTGAPRGNENTMDTVEVNCVADICAIDMKTFIPVQVGRYDFQSLEVAYMFYAHFARAKGFCVRRYNVIRSRKTSEILQQEFVCNKNGKREDRGLSSEQRKRTPRRDTRCGCKAMFRVHVDITTTRWYCTWFTNDHNHDLFDDVDCGLQAPHRKLSLSDIVQLNGMKDIGMGVPHMWRAFATQCGGFENVPFTKRSVYNQIGKQRQMQNSDASSSIQFIGKLSSNDSEMYWERTIDNDRRLQHLFWCDGISRLSYKVYGDVLAFDATYSKNKYLLPVVIFSGVNNHNRTTIFATAVVANETEETYVWLLEHFLRAMDGKHPKAVITDGAVVMKNAIQRVFPNAHHRLCAWHLLCNANTNIGNPLFTQAFRWCMFGDYDIGKFQKKWDEMVAKFGLQNNKWVKGLYDTRKKWASAHLRGKFFAGFRTTSRCEGLHSELGKFVHSRQNLTDFLVQYHHCLKHMRFREVSDDFHSIDGNPVPQTKMEALEMSGGKHFTNAIYLLYVSVIKQATMLKVLQCHEALTCTIYTVAKLISGVKEWHVSVYVEPSDYKCSCMKMESRGLPCEHILAVLHHLKVEELPGCLIMKRWTKGAKDGVYSAKGVAGHIWDSQKSARCGALMDLYRVLSELNSDTLEDFNNARNIANQQIELGRAKRSCQIGDVSNNKNDFAMVRDPVRIRSKARGGKGASSSGVRAKRVLNCSLCKQPGHNELTCTFLTTGGESLVHMGSSESEYDLFSAEDLNVDD* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0765 808 ProSiteProfiles Zinc finger SWIM-type profile. 604 638 IPR007527 GO:0008270
Lja4g0765 808 SMART 26again6 613 640 IPR006564 GO:0008270
Lja4g0765 808 Pfam FAR1 DNA-binding domain 115 205 IPR004330 -
Lja4g0765 808 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 104 700 - -
Lja4g0765 808 Pfam SWIM zinc finger 604 638 IPR007527 GO:0008270
Lja4g0765 808 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 104 700 IPR031052 GO:0006355
Lja4g0765 808 Pfam MULE transposase domain 325 417 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0765 Lja-Chr4 6370740 6374108 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g0765 MULE 3.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0765 - - ccaj:109791994 645.966