Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0758 ATGGGAAGAACCAAAGTTTCCACCCTTTTCTCTGCTAGTGCGAATAACCACTACAAGCTTCCTCTTTCAAACTCCATAAGCCAAACTCTTGTAAACAAACCACATCGCCAGAAAGATCGATTCCCCTATTCAGTCTTAGGATTTCTGCGGCGCCTCATCTATGAAAGGAAACCTGATGGGGGCTCACGAACTGAAGAGGAAGAGAAAGTCTACTCTTGGCTATATACCTTGGCCCAGTCTGACAAAAACTTGGTCTTTGAGTATGTTAGGTCCACAGAAAGAGGCTTAACATTCACTGAAGCTGAGAGCAGGCTGCAAGAAAATGGTCCAAACGTTCCATTTGATTATTCTTTTCCAAGCTGGTGGCATTTTCTATGGAAAGCTCTTTTCCACGCTTTCAACATGATTCTCATTGTTTTATCTGCTCTGTCATTCATCACCTGTGACTATCCAAATGGATCCATCATGCTCATATTGGTTTTCATCAGTGTCTCCCTCCGTTTCTATCAGGAATATAGCAGCTCGAAAGCAGCTAAGAGGCTTTCAGAATTTTTGAGATGCCCGGTGCGAGTTCAAAGATGTGCCGGTAGAGTTGTGCAGACAGAATTGAAGGTTCAAGTTGATCACAGGGATGTAGTTCCTGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCAGGGGATATCAGATTGTTATCTTCAACACATCTTGTTGTAAGCCAGGCCTCATTAACTGGGGAGTCTTGGACAACGGAAAAAACTGCTGATGTTAGAGAAGATCACAGCACACCTTTACTAGATTTAAAGAACATCTGCTTTATGGGTACAAACGTGGTATCAGGTACTGGAACAGGCTTAGTTATTTCAACTGGATCCAATACTTACTTGAGCACCATGTTTTCCAAGGTTGGGAAGAAGAAGCCACAAGATGACTTTGAAAAGGGTCTCAAATGGATATTTTACATGCTTATTTCTGTTATGCTAGTGGTTGTTACAGTCATGTTTGTGACAGAATACACATCATCTCTTGATTTGAGCAAAAGTATTCTCTTTGCGATCACAGTAGCATCTGCACTCAATCCTCAGATGCTACCCCTCATCATCAACACATGCCTTGCAAAAGGAGCCCTTGCTATGGCTAAAGACAGATGTATAGTAAAAAGCTTAACAGCTATACGCGAGATGGGATCAATGGATATCCTTTGTATTGACAAGACAGGCACCCTCACAATGAATCATGCAATCATGGTTAATCATCTTGACTGTAGAGGTTTACCCCAAGAAAAAGTTCTGCGCTTTGCTTTCCTTAGTTCTTACTTCAAGACTGATCATAATTTTCCTTTGGATGATGCAATCATGGCACATGTATATTCAAATGGATTCAGATTTCAACCATCCAAGTGGAGGAAGGTAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACATGCACTCCCAGTTCTTTGGCAGGTACATGGTAACAAAAGGAGCATTGGAGGAAGTCATGAGAGTTTGTTCTTTTATTGAGAATTTTGATAAAGATGGAATTTCCACCTTCTCTTTAGATGACTACCAGAGGATTTTGAATCTGTCTGAAGAATTGAGCAATGAAGGGTTAAGGGTTATAGCAGTAGCTATAAGGAAGCTGGAAATGCAGCAAACATGTGAAACAAGTAATGGAATCAGGAGAGGTTGTGAGGATTTTGAAAGAGACATGATGTTTCTTGGCCTGGTAACATTTTTTGACCCACCAAAGGACTCAGCAAAGCAAGCACTGTTTCAGTTGGCCAAGATGGGAGTTCAAGCAAAGGTTCTAACCGGTGACTCTCTCAGTTTGGCAACAAGGGTATGCAGAGAAGTTGGAATCAAAACCACACATGTAATCACAGGGCCAGAGCTAGAGCAACTAGACCAAGACACTTTCCATGAAACTGTCCAAACAGCCACAGTGCTAGCTCGCCTCACCCCGACTCAGAAACTAAGAGTGGTTCAATCCTTGCAGACAAATGGAAACCACATTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTTGCTCTTGATGCTGCCCATGTAAGCATTTCAGTGGACTCAGGTGTTGCAATTGCCAAAGACATGGCAGATATAATCTTACTAGAGAAAGATCTCAATGTGCTAGTTGCAGGAGTGGAGCATGGAAGACTCACATTTGGGAACACAATGAAGTATGTGAAGATGTCAGTGATTGCCAACTTGGGAAGTGTGATTTCACTCCTCATAGCATCACTTTTACTCAGGAATGAGCCTTTAACAGCTAGGCAGCTTCTCACTCAGAATTTCATATACAGTGTGGGACAAATTGCTATCCCTTGGGACAAGATGGATGAAGAGTATGTGAAGACTCCTCACAAATTTTCAGGGAAAGGGTTACCAATGTTCATATTGTGGAATGCACCTGTGTGCACTCTCTGTGATGTTGCAACACTCTTGTTTCTCTGGTTCTATTACAAGTCTTATGATGACTTGGAAGATAAATTCTTCCATTCAGCTTGGTTTATTGAGGGTCTTCTCATGCAGACACTCATCATCCATTTGATTAGGACAGAGAAAGTCCCTTTCATACAGGATGTTGCTTCTTGGCCAGTGATTTGTTCCACTCTTGTGGTTTCTGCTATTGGAATTGCATTTCCATTCACACCCATTGGGAAGGTCATGGGATTCATTGTTTTACCTGTCTCATTTTTTGGGTTTTTGGTTGTTCTTTTTCTGGGATATTTCACTATTGGCCAGGTTGTTAAGAGACTTTACATAATGGTTTATAAGAGATGGCTATGA 2844 0.4156 MGRTKVSTLFSASANNHYKLPLSNSISQTLVNKPHRQKDRFPYSVLGFLRRLIYERKPDGGSRTEEEEKVYSWLYTLAQSDKNLVFEYVRSTERGLTFTEAESRLQENGPNVPFDYSFPSWWHFLWKALFHAFNMILIVLSALSFITCDYPNGSIMLILVFISVSLRFYQEYSSSKAAKRLSEFLRCPVRVQRCAGRVVQTELKVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSTHLVVSQASLTGESWTTEKTADVREDHSTPLLDLKNICFMGTNVVSGTGTGLVISTGSNTYLSTMFSKVGKKKPQDDFEKGLKWIFYMLISVMLVVVTVMFVTEYTSSLDLSKSILFAITVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTAIREMGSMDILCIDKTGTLTMNHAIMVNHLDCRGLPQEKVLRFAFLSSYFKTDHNFPLDDAIMAHVYSNGFRFQPSKWRKVDEIPFDFIRRRVSVILETEDMHSQFFGRYMVTKGALEEVMRVCSFIENFDKDGISTFSLDDYQRILNLSEELSNEGLRVIAVAIRKLEMQQTCETSNGIRRGCEDFERDMMFLGLVTFFDPPKDSAKQALFQLAKMGVQAKVLTGDSLSLATRVCREVGIKTTHVITGPELEQLDQDTFHETVQTATVLARLTPTQKLRVVQSLQTNGNHIVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIASLLLRNEPLTARQLLTQNFIYSVGQIAIPWDKMDEEYVKTPHKFSGKGLPMFILWNAPVCTLCDVATLLFLWFYYKSYDDLEDKFFHSAWFIEGLLMQTLIIHLIRTEKVPFIQDVASWPVICSTLVVSAIGIAFPFTPIGKVMGFIVLPVSFFGFLVVLFLGYFTIGQVVKRLYIMVYKRWL* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0758 947 Gene3D - 415 591 IPR023299 GO:0000166
Lja4g0758 947 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 944 IPR023298 -
Lja4g0758 947 Gene3D - 187 291 - -
Lja4g0758 947 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 654 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g0758 947 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 156 450 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g0758 947 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 56 946 - -
Lja4g0758 947 SUPERFAMILY HAD-like 399 737 IPR036412 -
Lja4g0758 947 TIGRFAM ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 68 946 IPR006415 GO:0015444|GO:0015693|GO:0016021
Lja4g0758 947 PRINTS Magnesium-transporting ATPase signature 815 831 IPR006415 GO:0015444|GO:0015693|GO:0016021
Lja4g0758 947 PRINTS Magnesium-transporting ATPase signature 745 760 IPR006415 GO:0015444|GO:0015693|GO:0016021
Lja4g0758 947 PRINTS Magnesium-transporting ATPase signature 316 332 IPR006415 GO:0015444|GO:0015693|GO:0016021
Lja4g0758 947 PRINTS Magnesium-transporting ATPase signature 850 871 IPR006415 GO:0015444|GO:0015693|GO:0016021
Lja4g0758 947 PRINTS Magnesium-transporting ATPase signature 900 921 IPR006415 GO:0015444|GO:0015693|GO:0016021
Lja4g0758 947 PRINTS Magnesium-transporting ATPase signature 795 808 IPR006415 GO:0015444|GO:0015693|GO:0016021
Lja4g0758 947 SFLD p-type atpase 385 737 IPR044492 -
Lja4g0758 947 Pfam E1-E2 ATPase 198 382 - -
Lja4g0758 947 Pfam Cation transporter/ATPase, N-terminus 87 144 IPR004014 -
Lja4g0758 947 Gene3D - 400 724 IPR023214 -
Lja4g0758 947 SUPERFAMILY Calcium ATPase, transduction domain A 198 302 IPR008250 -
Lja4g0758 947 SFLD C1.7: P-type atpase like 385 737 - -
Lja4g0758 947 SMART Cation_ATPase_N_a_2 76 149 IPR004014 -
Lja4g0758 947 Pfam haloacid dehalogenase-like hydrolase 399 700 - -
Lja4g0758 947 Gene3D - 150 897 - -
Lja4g0758 947 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Lja4g0758 947 PANTHER CATION TRANSPORTING ATPASE 56 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0758 Lja-Chr4 6314875 6320154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0758 94 813 Primary Pumps ATPases(2) AT1G10130 26.367 7.15e-63 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0758 K01531 - gmx:100795153 1553.5