Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0757 ATGCTGGAAAATCAAAACAACAAGCATCACACTCAGTTCACTCATCATATCATAACCTTAATTGCATTCATTCACAGCCTTGTATATCTCAAAACAAAACTCCTCTGTTTTTCACCCTGTTTTGTTTCGCTAATCATGGCTTTCCATCACAGAAAATTGCTGCACCACAAAATTTCAGCACCAACACCTTCCCCTCTTCAACCACCACCAATTTTACTCCCAAAGCCACTGTTCCCTCTTCCATTCACTTCCCACAGTTTCCACCATTTCAAACTCAAAGCACTTCCACTCGCCATGGTAATCATAGCTTCCATGTGTTGCATGTTCACGTTTCTTTGCTGCGTCTCCATCATCATAAGAAGGTACTATTCTTCAAGGAGAAGATATATCAATAACCAGAGAAGCAGAACAACCACGCCGATTTTGTTCGATGTGAGCGGCGATTCTTCTCCGGTTTTCGATGATGGCGTGGAGTCGCCGGCGCTACAGTTTGTTGACCACCCCATATGGTTAATCCGCACGGTGGGTCTCCAACAATCGCTAATCGATTCGATCACGGTATTCAAATACAGAAAATATGAAGGGTTTGTTGATGGAACAGAGTGCTCTGTTTGCCTCGGCGAGTTTGAACAGGACGAGAATCTAAGGCTCTTACCCAAGTGTAGTCACGCTTTTCACATCCCCTGCATCGATACCTGGCTTAGATCGCATAAGAATTGTCCCCTGTGCCGTGCCCCTGTGATCAATGATTCTGCTGATGGTAATGGAAGTGGGGGTGGTGGTGGTGTAAATTCAAACGTTTCTGGTGAGACTCAGAATGAGAATCAAGAGACCCATATTGAGAATTTTGATGCTGAGGTAGGATCAGAGGAAAGTGAGATGACTGGAGATGATGATTCTGGTGTATCATGTACTAGTGGAACAAATTTTGATAAAGTGTTGCCTAATTCATTACCAGAGGAATTGGAAGATGAAGTTCAGCCTCTAAGGAGATTTGTTTCAATGGATTCATCTTCTTCTTCTTCTTCAACAATATTTCATGATGTGATTGATTCAGTTTCTGATCGAGAGAGCTCTGATACTGAATTTGGTGAGATAAATTGTAAGGGAGTGAGCATTGGTAAGCATGGTAGTGGAAGTTCAAACGTTTTCAATCTGGCTTCAATTGGACGTGCGTTGCAGAAGAGGCCTGTGTCAATGAGAAGATCGTTTTCGCATAACAGGAAATCCTTGTTTTCTAGACACTCCAGGAGCCAGAGCTTAACTCTTCCTTTGTAA 1278 0.4288 MLENQNNKHHTQFTHHIITLIAFIHSLVYLKTKLLCFSPCFVSLIMAFHHRKLLHHKISAPTPSPLQPPPILLPKPLFPLPFTSHSFHHFKLKALPLAMVIIASMCCMFTFLCCVSIIIRRYYSSRRRYINNQRSRTTTPILFDVSGDSSPVFDDGVESPALQFVDHPIWLIRTVGLQQSLIDSITVFKYRKYEGFVDGTECSVCLGEFEQDENLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVINDSADGNGSGGGGGVNSNVSGETQNENQETHIENFDAEVGSEESEMTGDDDSGVSCTSGTNFDKVLPNSLPEELEDEVQPLRRFVSMDSSSSSSSTIFHDVIDSVSDRESSDTEFGEINCKGVSIGKHGSGSSNVFNLASIGRALQKRPVSMRRSFSHNRKSLFSRHSRSQSLTLPL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0757 425 Pfam Ring finger domain 201 244 IPR001841 -
Lja4g0757 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 253 IPR013083 -
Lja4g0757 425 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 66 417 IPR044675 -
Lja4g0757 425 MobiDBLite consensus disorder prediction 253 275 - -
Lja4g0757 425 SMART ring_2 202 243 IPR001841 -
Lja4g0757 425 SUPERFAMILY RING/U-box 182 249 - -
Lja4g0757 425 CDD RING-H2_PA-TM-RING 201 244 - -
Lja4g0757 425 PANTHER RING-H2 FINGER PROTEIN ATL54 66 417 - -
Lja4g0757 425 ProSiteProfiles Zinc finger RING-type profile. 202 244 IPR001841 -
Lja4g0757 425 MobiDBLite consensus disorder prediction 258 275 - -
Lja4g0757 425 MobiDBLite consensus disorder prediction 397 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0757 Lja-Chr4 6311384 6313424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0757 176 425 C3H Transcription Factor Family AT5G17600 37.786 2.94e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0757 - - lja:Lj4g3v2731650.1 773.467