Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0756 ATGAAGAGACTTGGAAGATCTGATTCTTTAGGTGCTCTCATGAAGATTTGTCCACCAACAACAGACGAAAACCTCAGTCCAAGGAGCAACCACAACCATGTTTATGGAAGGGAGTTTCAGTCCATGCTGGAAGGACTAGACGAGGAAGGGTGTGTTGAGGAACCAGGACACCACTCTGAGAAGAAACGAAGACTCAGTGTGGATCAAGTCAAGGCTTTGGAGAAGAACTTTGAAGTAGAAAACAAACTTGAACCAGACAGAAAAGTGAAGCTAGCTCAAGAGCTTGGCTTGCAACCGAGGCAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTGGAAAGAGATTATGGCGTTCTGAAAGCAAACTATGAAGCACTGAAACTCAACCATGATTCACTCCAACGTGACAATGAAGCCTTGCTCAATGAGATTAAGGAATTGAAATCAAGGGTGCAAGAAGAGAACAACAACAACACTGAAAGTGATGCTTATGTGAAGGAAGAGATGATAACCCCGCAAGACATGACTCCACTTTCTGAAACCGCCATTCCTGGATCCGATTCCAAGGAATTGAGCTATGATTGCTGCTTCAAGAGCTCTGATGATGGGGTGGACGGAACCACCACCGCGTCGCTCTTCGCTGAGAATCTGAAAGACGGTTCTTCCGACAGCGATTCCAGCGCGATCTTGAACGAAGACAACAACAGTCCCAACGCGGCGATTTCTTCATCTGGGGTTCTTCAGAGTCACGACTTTTTCATTTCTCCAGGGTCATCTTCGTTGAAGTTCAACTGCTCTTCGTCTTCTTCGCCGTCATCCATGAGTTGCTTCCAGTTTCAGAAGCAGTACCATCCTGCACAGTATGTGAAGATGGAGGAGCACAATTTCCTCAGTGCTGATGAGGCTTGTAACTTTTTCTCAGATGAACAACCACCAACCCTGCAGTGGTACTGTCAGGAAGAGTGGAATTGA 990 0.4616 MKRLGRSDSLGALMKICPPTTDENLSPRSNHNHVYGREFQSMLEGLDEEGCVEEPGHHSEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNHDSLQRDNEALLNEIKELKSRVQEENNNNTESDAYVKEEMITPQDMTPLSETAIPGSDSKELSYDCCFKSSDDGVDGTTTASLFAENLKDGSSDSDSSAILNEDNNSPNAAISSSGVLQSHDFFISPGSSSLKFNCSSSSSPSSMSCFQFQKQYHPAQYVKMEEHNFLSADEACNFFSDEQPPTLQWYCQEEWN* 330
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0756 329 Coils Coil 115 163 - -
Lja4g0756 329 Gene3D - 56 123 - -
Lja4g0756 329 Pfam Homeobox associated leucine zipper 116 158 IPR003106 GO:0006355|GO:0043565
Lja4g0756 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 321 - -
Lja4g0756 329 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Lja4g0756 329 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Lja4g0756 329 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Lja4g0756 329 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Lja4g0756 329 MobiDBLite consensus disorder prediction 223 242 - -
Lja4g0756 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 321 IPR045224 GO:0003700
Lja4g0756 329 SUPERFAMILY Homeodomain-like 44 118 IPR009057 -
Lja4g0756 329 CDD homeodomain 61 117 IPR001356 GO:0003677
Lja4g0756 329 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Lja4g0756 329 SMART HOX_1 59 120 IPR001356 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja4g0756 Lja-Chr4 6282898 6285298 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0756 1 323 Homeobox Transcription Factor Family AT4G40060 46.588 4.84e-81 246
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja4g0756 Homeodomain 3.7e-16 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0756 K09338 - gmx:100796213 465.692