Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0746 ATGGACGAGGAAGAGCACGAGGTGTACGGAGGAGAAATCCCCGACGTCGGAGAAATGGAAGCAGACGAGCTCGACGAAATGAAGCGCCGCTTGAAGGAAATGGAAGAAGAAGCCGCCGCTCTTCGTGAGATGCAAGCTAAAGTCGAGAAGGAGATTGGCACCGTTCAAGATCCGGCTGCTGCAGCTGCTTCACAAGCAAACAAGGAGGAGACAGATGGTCGGTCCGTTTTTGTTGGCAATGTTGATTATGCATGCACACCTGAAGAAGTGCAGCAACACTTTCAATCATGTGGTACAGTTAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTGGAAGCTGAAGCTGTTCAAGAGGCTCTCCGGTTGAATGAATCTGAACTGCATGGCCGTCAACTGAAGGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAGCAATATCGTCCTAGGCGCTATGATCCTTACATGGCATATGGTTTCAGGAGGCCATATGCTCCTTCTCCATACTTCTACTCCCCTTATGGGTATGTTCCTAGGTTTAGAAGGCCAGCGCGTTACATGCCTTACTACTAG 606 0.4901 MDEEEHEVYGGEIPDVGEMEADELDEMKRRLKEMEEEAAALREMQAKVEKEIGTVQDPAAAAASQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALRLNESELHGRQLKVLPKRTNVPGMKQYRPRRYDPYMAYGFRRPYAPSPYFYSPYGYVPRFRRPARYMPYY* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0746 201 CDD RRM_II_PABPs 75 146 - -
Lja4g0746 201 Coils Coil 17 51 - -
Lja4g0746 201 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 199 - -
Lja4g0746 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 150 IPR000504 GO:0003723
Lja4g0746 201 PANTHER POLYADENYLATE-BINDING PROTEIN 3 1 199 - -
Lja4g0746 201 SMART rrm1_1 75 146 IPR000504 GO:0003723
Lja4g0746 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 144 IPR000504 GO:0003723
Lja4g0746 201 Gene3D - 16 146 IPR012677 -
Lja4g0746 201 SUPERFAMILY RNA-binding domain, RBD 64 169 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0746 Lja-Chr4 6122435 6125296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0746 75 145 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 7.83e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0746 K14396 - gmx:100789721 313.923