Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0732 ATGGCTGAAACCACGCGCTATGTTCCTCCAAACCAATTAGATATTGAACAAATTATTTTGGAAGCACAGCATCGATGGCTACGTCCAGCAGAAATTTGTGAAATTCTCAGTAATTACAGGAACTTTCGAATTGCTTCAGAGCCTGCATATATGCCACCAAGTGGTTCACTTTTCCTATTTGATCGGAAGGTGATGCGATACTTTAGAAAGGATGGTCATAACTGGAGGAAGAAAAAAGATGGGAAAACAGTCAGGGAAGCTCATGAGAGACTTAAGGCAGGAAGTGTGGATGTACTGCACTGCTACTATGCCCATGGAGAAGGACATGAAAATTTTCAAAGACGCACTTACTGGATGCTTGAAGAGGAACTCTCACACATTGTTTTTGTCCACTATCGGGATGTGAAGGGAACCAAAGCAAATTATAGATGGGCTAAAGAAAATGAAGAATCTCTACCATCTCAACAAACTTACAAAATTATGCCCAACACAGAGACAGAGGTGAAGACTTCTATATCATCCACTCTTCATCCACGCGGTTACCAGGTTCCTTCACAAACTGTAGATACAAGCATGAACAGTGCTCAAACATCAGAATATGAAGAAGCTGAATCAGCATTCAATAACCATGCTAATTCTGAGTTCTACTCTTTCCTTGAGCTTCAACACCCTGTTGTTGAGAACAGTAAAGCTCAAATTGCTGATTCGTATTGTCCTTTGCCACTCAAAGATGACCGAGCAAAGTTTCCTGTCATTCCTGGAGTGAACTATACTTCGCTTGGTCAAGCCAATAAAATCAAAGACATTCATAATGTTGGATTGACGTATGAACCCTCAAAGTCCCTTGGCTTTTCATCTTGGGAAGATATCTTAGGAAATAATGGTGGAAGTCATCATGTGCCTTTTCAGCCTTCATTTTCGGAAACACAATCGAATGACAAAGGAATCAATAGGGATCCCTCTCAAGCATATGAGATAATGGGGCAACATTTTACCATCAGCATTGATGAACAGCACGGCAATGGAAGTCCCATAACACCTGAAGGAAGTTGGCAGGCTTCTGAGTTTAATTCTTTAAGCATGTCCAATTCACCCATAGATGGTTTGTATTCAGGCTCAACATGTGAGGTTATTTATAGCAACTGTGCACAGGAAGTTTATGAAGTTGATTTTCAAAAATCCATGGAACAGTGTCTTCTACATCCATACAAACAAAACAAGTTTCTTATGCAAAATGACCCCCAAGAAAATTCTTTGAAAGAAAAAGACAGCCTAAATTCAGATATAGAGGCCAATAGAAGCCTGGATGGAATAGAAGACACGTCTCTCTCTCTAAAGACAAATCTGTTAGATGGAACACAAGAGGGTCTGAAGAAGCTTGATAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCAAATAAGCAATCAACTTCTGATGCTTATTGGGATGCAGTCGAAAGTGAAAATGGAGTTGACAGTACAACTATTCCTTCCCTGGACACCTATGTACTGGATCCATCTGTTTCCCATGATCAGCTTTTTAGCATTATTGATTATTCCCCAAGCTGGACATTTGAAGGCTCAGAAACTATGGTTCTCATTTCAGGGCAATTCTTAAGGAGTCAACATGAAGCAGAACAATGTAAATGGTCATGCATGTTTGGCGAGAAAGAAGTGCCAGCAGAGATAATTGAAAATGGTGTTCTTTGCTGTCATACTCCCCCACACAAGGCTGGAAGAGTTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTACGAGAATTTGATTTCCGGGTAAACTATTCTCCGGAAATCAACACTGCAGGTGAGAACAGAGGCAGCATTGTTGATATTTATAACATACGATTCGGAGAACTGTTGTCCCTCGAGCATGCCTTACCTTCAAGCTCAGATTCACAGAGTATAAGTGAGAAATCTGAACTGAGAAATGAAATCAGCTCTTTGCTGAGGAGGGAAGATGATGATTGGGATAAGCTGCTGAAACTTACTCTAGAGATAGATTTTTCTCCAGAAATTTTACAGGAGCAGCTGCTTCAAAATCTACTGAAAGATAAGTTATTGGCATGGCTCCTTCACAAAATTACTGACGATGGGAAAGGCCCTAATGTCTTAGATGGGGGTGGTCAAGGCGTGCTCCATTTTGCGGCTGCTCTTGGCTATGACTGGGCTCTAGAACCCACAGTAGTTGCAGGCGTGAATGTGAACTTTCGCGATGTACATGGATGGACTGCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGAACAGTGGCTTCACTCATCTCTCTAGGCGCAGCACCGGTAGCACTGACCGATCCATGCCTTGCATACCCTTCTGGTAGAACACCAGCTGACCTAGCTTCGGCAAATGGACACAAAGGAATTGCAGGGTTCCTTGCTCAATCCTTCCTGCATGCACAGCTCTCATCTCTCGATTTGAACAGGAATATGGGAGAAACTTCTGCAGCAAAAGTATTTCACAGAATCCAAGAACAAAACACTGCACAAGTTAATCATTATGAGGGCCTGTCATATGAACTATCATTGAAAGATTCACTGGCTGCAGTGTGCAATGCCACCCAAGCTGCTGCTCGCATTCATCAAGTTTTCAGAGTGCAATCCTTCCAGAGAAAACAACTCAAGGAACATGGTGAGGACAGATTTGGAATATCTGATGAACAGGCTCTTTCACTTGTCACAAAGAATGTGAAACCACACAAATCTGGACAACGCAATGAGCCTGCTCATGTTGCTGCAACACGAATCCAGAACAAGTTCCGCGGTTGGAAAGGCAGAAAAGAATTTTTGCTGATTCGACAAAGAATCGTAAAAATTCAGGCTCATGTGAGAGGTCACCAGGTTAGGAAGAACCATGGGAAGATAATTTGGTCAGTTGGAATTCTTGAAAAGGTTGTTTTACGTTGGCGCCGAAAAGGATGTGGTTTGCGTGGATTTAAATCGGAGGGAGTTTCAGAGGGAAATATGGTACAAGGTGAATCTTCCACAGAGGATGAATATGATTTGTTAAAGGAAGGAAGGAAACAAACAGAGCAAAGGTTGCAGATAGCCTTGGCTAGGGTTAAGTCAATGGTTCAGTATCCAGAGGCTAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAATCAGGTTTGCTACCCATTGTTATTTAAATTTACTTGTTGTGAAAGAAAAATTATATCCTTGAAAAACGCTTCCAGAGCAATTGTTTTTGTGATTGACAATAGAGGTTGCTTAGTCTTTTTTATATGCCTCTTGCAGGTAAAGCACGAGAGGACTTCTAACAATTCAGAAGAAACAAGAGAATTTGATAACCTCATTGACCTTGAAGCATTGCTGGACGAAGATATTTTCATGCCAACTGCAACTTAG 3453 0.4153 MAETTRYVPPNQLDIEQIILEAQHRWLRPAEICEILSNYRNFRIASEPAYMPPSGSLFLFDRKVMRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEGHENFQRRTYWMLEEELSHIVFVHYRDVKGTKANYRWAKENEESLPSQQTYKIMPNTETEVKTSISSTLHPRGYQVPSQTVDTSMNSAQTSEYEEAESAFNNHANSEFYSFLELQHPVVENSKAQIADSYCPLPLKDDRAKFPVIPGVNYTSLGQANKIKDIHNVGLTYEPSKSLGFSSWEDILGNNGGSHHVPFQPSFSETQSNDKGINRDPSQAYEIMGQHFTISIDEQHGNGSPITPEGSWQASEFNSLSMSNSPIDGLYSGSTCEVIYSNCAQEVYEVDFQKSMEQCLLHPYKQNKFLMQNDPQENSLKEKDSLNSDIEANRSLDGIEDTSLSLKTNLLDGTQEGLKKLDSFNQWMSKELGDVEESNKQSTSDAYWDAVESENGVDSTTIPSLDTYVLDPSVSHDQLFSIIDYSPSWTFEGSETMVLISGQFLRSQHEAEQCKWSCMFGEKEVPAEIIENGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRVNYSPEINTAGENRGSIVDIYNIRFGELLSLEHALPSSSDSQSISEKSELRNEISSLLRREDDDWDKLLKLTLEIDFSPEILQEQLLQNLLKDKLLAWLLHKITDDGKGPNVLDGGGQGVLHFAAALGYDWALEPTVVAGVNVNFRDVHGWTALHWAAFCGRERTVASLISLGAAPVALTDPCLAYPSGRTPADLASANGHKGIAGFLAQSFLHAQLSSLDLNRNMGETSAAKVFHRIQEQNTAQVNHYEGLSYELSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQLKEHGEDRFGISDEQALSLVTKNVKPHKSGQRNEPAHVAATRIQNKFRGWKGRKEFLLIRQRIVKIQAHVRGHQVRKNHGKIIWSVGILEKVVLRWRRKGCGLRGFKSEGVSEGNMVQGESSTEDEYDLLKEGRKQTEQRLQIALARVKSMVQYPEARDQYHRLLNVVTEIQENQVCYPLLFKFTCCERKIISLKNASRAIVFVIDNRGCLVFFICLLQVKHERTSNNSEETREFDNLIDLEALLDEDIFMPTAT* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0732 1150 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Lja4g0732 1150 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lja4g0732 1150 SMART iq_5 953 975 IPR000048 GO:0005515
Lja4g0732 1150 SMART iq_5 930 952 IPR000048 GO:0005515
Lja4g0732 1150 Gene3D - 936 977 - -
Lja4g0732 1150 ProSiteProfiles Ankyrin repeat profile. 756 788 IPR002110 GO:0005515
Lja4g0732 1150 Gene3D Immunoglobulins 514 610 IPR013783 -
Lja4g0732 1150 ProSiteProfiles Ankyrin repeat region circular profile. 756 781 - -
Lja4g0732 1150 Gene3D - 690 935 IPR036770 -
Lja4g0732 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 980 IPR027417 -
Lja4g0732 1150 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1070 - -
Lja4g0732 1150 ProSiteProfiles IQ motif profile. 931 960 IPR000048 GO:0005515
Lja4g0732 1150 SMART CG_1_2 18 136 IPR005559 GO:0003677
Lja4g0732 1150 ProSiteProfiles IQ motif profile. 954 978 IPR000048 GO:0005515
Lja4g0732 1150 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 1 1070 - -
Lja4g0732 1150 SUPERFAMILY E set domains 521 606 IPR014756 -
Lja4g0732 1150 SMART ANK_2a 795 824 IPR002110 GO:0005515
Lja4g0732 1150 SMART ANK_2a 756 785 IPR002110 GO:0005515
Lja4g0732 1150 Pfam IQ calmodulin-binding motif 933 951 IPR000048 GO:0005515
Lja4g0732 1150 Pfam IQ calmodulin-binding motif 956 974 IPR000048 GO:0005515
Lja4g0732 1150 Pfam IPT/TIG domain 521 595 IPR002909 -
Lja4g0732 1150 SUPERFAMILY Ankyrin repeat 712 817 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0732 Lja-Chr4 6027431 6035270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0732 59 1071 CAMTA Transcription Factor Family AT2G22300 46.962 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lja4g0732 CG-1 4.5e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0732 K21596 - gmx:100798875 1649.8