Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0725 ATGACACCTTCAAGAGTTTTTTCCTTTCTTTGTTTCCTTGTCATACTCACATCTCACACCAATGCCCAGCCAAGCTTCTTGTACCATTTCTGCATGAATGATAACGGCAACTACACTGAAAACAGTAACTACAAGACCAACCTCAACACCCTCTTGTCATCTCTGTCTTCCAACACACAAATTGATTATGGCTTCTATAATTTCTCCGAGGGCCAAAACTCTGACAAAGTTAACTCAATTGGGATGTGTAGAGGAGATGTTAAGCCAGAAACTTGCCGCAGTTGCCTCAATGATTCAAGAGTCCTTCTCACGCAGCGTTGTCCAAACCAGAAAGAGGCTATTGGCTGGTATGATAACTGCATGTTGCGGTACTCAAACCGTTCAATATTTTCTGTCATGGAACCTCAACCTACATACTATTTGTGGACACAGAACAATGCAAGTGATGTGGATCAGTTCAATCAAGTGCTTCAGGACTTGGTGGGAAGTTTGAGAAGTGAAGCTGCATCTGGTGATTCTCTTAAGAAGTATGCTGCAGGAAATGCAGCAGGGCCAAGCTTTCAAACTATATTTGCTCTTCTGCAATGCACTCCTGATTTGTCAGAGCAAGAGTGCAATGATTGCTTGGTGGAGGCTATCTCAGATATCTCAAGTTGTTGTGCTGGCAAGACAAGTGGGAGGATTGGAAAACCAAGCTGCAATCTTAGATTTGATACTTCACCCTTCTATGACTCTACTACAACTGATGCCTCTCCTCCATCACAATCACAAGTACCTCCTCCAGGCGCAAATAATACTTCCACAAAAGGAAATAACAACACAACACGAATTGTCATTGCGGTAGTTGTGCCAATCGTAGTCATCACTGTACTGGTCATATCTGTGTGCATCTTCTTAAGAGCAAGGAAGCAAAGGAGACATATTGATGATACTGATACTGAAGCTGACAGTGAAATTGAACCTGCTGATACTATGCAGTTCAACTTTGAGACCATAAGAAAGGCTACAAATAACTTTTCCGACACAAATGTGCTAGGACGAGGGGGATTTGGGCCTGTTTACAAGGGTAAGCTTTCAAATGGACTAGAAGTTGCTGTGAAAAGGTTGTCAATAAATTCAGGACAAGGAGATACAGAGTTCAAGAACGAGGTACAGTTGGTGGCCAAGCTACAACACAGAAATTTAGTCAGGCTACTTGGCTTCAGTTTGGAAAGAGAAGAAAAGTTACTAGTTTATGAGTTTGTTCCCAATAAAAGCCTTGATTACTTTATTTTTGATCCAGTTAAGCGTGCACATATGGATTGGGAAAGGCGGTATAAAATCATAGGAGGCATTGCCAAAGGCCTTCTTTACCTTCATGAGGATTCGAGACTGCGAATTATTCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGATTGTTTGCTGTGGATCAAACTCAAGGAAACACAAGTAGAGTTGTTGGAACGTATGGATATATGGCACCTGAGTATGTAAGGGAAGGACTGTTCTCAGTGAAGTCAGATGTGTTTAGCTTTGGCGTACTTGTTCTAGAGATTGTAAGTGGCCAGAAAAATAGTAGCTTCTATAATGGAGAGTATGTAGAGGATCTAATAAGCTTTGCCTGGAAAAGCTGGAAGGAGGGAACAGCATCAAATCTTGTGGATCCTACATTGGTCAATGGCTCAAGGAATGAAATAATGAGATGCATCCACATTGGTTTACTGTGTGTTCAAGGAAACTTAGCTGACAGGCCAACCATGGCTGCTGTTGTGCTCATGCTTAACAGCTACTCACTCACTCTCCCAGTACCTGCAGAGCCTGCATTTTTCATGAACAGCAGAGGCTTGTCAGATATTCAGTCATGGGAGGAAGATGATTCAGGGACAACAGTGTGA 1941 0.4209 MTPSRVFSFLCFLVILTSHTNAQPSFLYHFCMNDNGNYTENSNYKTNLNTLLSSLSSNTQIDYGFYNFSEGQNSDKVNSIGMCRGDVKPETCRSCLNDSRVLLTQRCPNQKEAIGWYDNCMLRYSNRSIFSVMEPQPTYYLWTQNNASDVDQFNQVLQDLVGSLRSEAASGDSLKKYAAGNAAGPSFQTIFALLQCTPDLSEQECNDCLVEAISDISSCCAGKTSGRIGKPSCNLRFDTSPFYDSTTTDASPPSQSQVPPPGANNTSTKGNNNTTRIVIAVVVPIVVITVLVISVCIFLRARKQRRHIDDTDTEADSEIEPADTMQFNFETIRKATNNFSDTNVLGRGGFGPVYKGKLSNGLEVAVKRLSINSGQGDTEFKNEVQLVAKLQHRNLVRLLGFSLEREEKLLVYEFVPNKSLDYFIFDPVKRAHMDWERRYKIIGGIAKGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFAVDQTQGNTSRVVGTYGYMAPEYVREGLFSVKSDVFSFGVLVLEIVSGQKNSSFYNGEYVEDLISFAWKSWKEGTASNLVDPTLVNGSRNEIMRCIHIGLLCVQGNLADRPTMAAVVLMLNSYSLTLPVPAEPAFFMNSRGLSDIQSWEEDDSGTTV* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0725 646 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Lja4g0725 646 Pfam Protein tyrosine and serine/threonine kinase 343 606 IPR001245 GO:0004672|GO:0006468
Lja4g0725 646 SUPERFAMILY Protein kinase-like (PK-like) 324 636 IPR011009 -
Lja4g0725 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Lja4g0725 646 MobiDBLite consensus disorder prediction 244 270 - -
Lja4g0725 646 Gene3D Phosphorylase Kinase; domain 1 300 414 - -
Lja4g0725 646 ProSiteProfiles Protein kinase domain profile. 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0725 646 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Lja4g0725 646 SMART serkin_6 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0725 646 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Lja4g0725 646 Pfam Salt stress response/antifungal 145 239 IPR002902 -
Lja4g0725 646 CDD STKc_IRAK 345 610 - -
Lja4g0725 646 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 632 - -
Lja4g0725 646 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 632 - -
Lja4g0725 646 Gene3D Transferase(Phosphotransferase) domain 1 415 616 - -
Lja4g0725 646 Gene3D - 136 242 IPR038408 -
Lja4g0725 646 Gene3D - 23 128 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0725 Lja-Chr4 5981550 5985266 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0725 6 628 Receptor kinase-like Gene Family AT4G21410 50.776 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g0725 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0725 - - gmx:102662291 1024.62