LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g0724	ATGGTGACCAACCGTGTAACACTTTTTTTGCTCTTTGCAATCGGATTACTACTATGCTCCTCCGCCGCAGCTCCCAATTACATCGCCAATTACTGCAACCAAACCTCCAATTCCACCGCCAGATTCCAATCCAATCTCAACGTCCTCCTCTCCTCACTCATCTCCAACGCCTCCCAAACTGACGGCTACTACGCTTCCGCCATGGGCAGAGGAACCCCAGACGTCACCGAGGGCGATCTCCTCTGCCGCGGCGACATCTCCCCCACCACCTGCCATGACTGCGCCGCCGCCGCAGCGGCGGAAATCACGCGCCGCTGCCCTAACAAAACAGCGTCCATTGTCTGGTACGACGAGTGCACCATCACCTACACCTACCGCTACTACTCCCCCACCGGAACCGACCAGAGAGCAGCGTTGCCGAACGATGACGGCGACGGCAACGGCAACAACGGTGACATTTCTGATTCGGATATTGACAGTTACAACAGAACGTTGTTCGGTTTGTTGAATCGGTTGGGGGAGGAAGCTGCGGATCCTGGTTCGGCGAAGAGATTTGCGAGCGGCGATGAGGGGTTTGGCGGGTCATCGCGGCGGGTGTATGCGCTGGTGGAGTGCGCGGGGGATATGACGCGTGGTCAGTGTGAGGAGTGTTTGCAGAATGCGATTGGAATTCTTCCGGCCTGTTGCGGAGGAAGAAGGGGTGCGAGGGTTATGCTTGCGCGGTGTAATGTTAGGCACCAATTGTACTTGTTTTACAATTCAACAAGTGTGACTACTTCTCCTCCCTCAGGTGATAAGAAATCAGAGTCATGGAAAATTGCCTTACTTGTAGTTATCATCAGTTTGATAATTTCCTTGTGCTGTCTCTGTTATTTCCTAATGAGAAAATCAAGGAAGAAACATAGGTCCCTTCTTAGGAGAAACTTTGGGGATGAAAGCTCGAATTTGGGGTCATTACAATTCAATTTGGCTACAATTCAGGATGCCACAAGGAATTTTTCAATTGAAAACAAAATCGGAGAGGGTGGATTTGGAGAGGTTTACAAGGGTATCCTTTTAGATGGACAACAAATAGCCGTTAAAAAACTCTCACAGTTGTCAGGACAAGGAGCTATAGAATTTAAGAACGAGATTACACTCATAGCCAAACTTCAACATAGAAATCTAGTGACGTTGCTAGGATTTTGCTTGGAAGAACGAGAGAAGATGCTTATTTATGAATTTGTGCCTAACAAGAGCCTTGATTACTTTCTATTTGGTCCCCACAAGAGCGGCCGTATATTGAATTGGTTTGAGCGTTATAAAATTATCGAAGGAATCGCTAGAGGAATTCTTTATTTACATGACCATTCACGATTAAAAGTTATACATCGTGATCTTAAACCTAGCAATATATTGATAGACCAAAATATGAATCCAAAGATCTCTGATTTTGGTTTGGCAAGGATGGTTTCTATAGATCAAGATCGCGGAAATACAAATAGAATTGTGGGTACATATGGTTATATGTCTCCGGAATATGCAATGCATGGACAATTTTCAGAAAAGTCAGATGTGTTTAGTTTTGGTGTTATAGTTTTGGAGACAATTAGCGCGAAAAAGAACACTCGTTCTCTTTTACCTAATGATGATGATGACCTCTTGAGTTATGCTTGGAGGCAATGGAGGGATCAAACACCATTGAATATATTGGACAAAGATATAAAAGAGCCTTTCAACCATAGTGAAATCATTAAGTGCATCCAAATTGGTTTACTATGTGTGCAAGAGAAGCCAGAGAATAGACCTACTATGGAAAAAATTGTTTTGTATCTCAGTAGCCCTTTAGCTGAGTTGCCACTTCCTGGAGAACCGATCATTTCTATTCGCAATATGGTAGCAGGGGAATCAAGTTCTGGTTCTGCATTATCAACTAATGAAATGTCCGTGAGTATATTTGTCCCTCGATAA	1950	0.4467	MVTNRVTLFLLFAIGLLLCSSAAAPNYIANYCNQTSNSTARFQSNLNVLLSSLISNASQTDGYYASAMGRGTPDVTEGDLLCRGDISPTTCHDCAAAAAAEITRRCPNKTASIVWYDECTITYTYRYYSPTGTDQRAALPNDDGDGNGNNGDISDSDIDSYNRTLFGLLNRLGEEAADPGSAKRFASGDEGFGGSSRRVYALVECAGDMTRGQCEECLQNAIGILPACCGGRRGARVMLARCNVRHQLYLFYNSTSVTTSPPSGDKKSESWKIALLVVIISLIISLCCLCYFLMRKSRKKHRSLLRRNFGDESSNLGSLQFNLATIQDATRNFSIENKIGEGGFGEVYKGILLDGQQIAVKKLSQLSGQGAIEFKNEITLIAKLQHRNLVTLLGFCLEEREKMLIYEFVPNKSLDYFLFGPHKSGRILNWFERYKIIEGIARGILYLHDHSRLKVIHRDLKPSNILIDQNMNPKISDFGLARMVSIDQDRGNTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVLETISAKKNTRSLLPNDDDDLLSYAWRQWRDQTPLNILDKDIKEPFNHSEIIKCIQIGLLCVQEKPENRPTMEKIVLYLSSPLAELPLPGEPIISIRNMVAGESSSGSALSTNEMSVSIFVPR*	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g0724	649	Gene3D	Phosphorylase Kinase; domain 1	294	408	-	-
	Lja4g0724	649	CDD	STKc_IRAK	339	605	-	-
	Lja4g0724	649	Gene3D	-	24	127	IPR038408	-
	Lja4g0724	649	Gene3D	-	147	251	IPR038408	-
	Lja4g0724	649	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	11	631	-	-
	Lja4g0724	649	ProSiteProfiles	Protein kinase domain profile.	333	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja4g0724	649	Gene3D	Transferase(Phosphotransferase) domain 1	409	611	-	-
	Lja4g0724	649	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	11	631	-	-
	Lja4g0724	649	SMART	serkin_6	333	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja4g0724	649	ProSitePatterns	Protein kinases ATP-binding region signature.	339	362	IPR017441	GO:0005524
	Lja4g0724	649	Pfam	Salt stress response/antifungal	32	124	IPR002902	-
	Lja4g0724	649	Pfam	Salt stress response/antifungal	158	248	IPR002902	-
	Lja4g0724	649	SUPERFAMILY	Protein kinase-like (PK-like)	317	622	IPR011009	-
	Lja4g0724	649	ProSiteProfiles	Gnk2-homologous domain profile.	24	128	IPR002902	-
	Lja4g0724	649	Pfam	Protein kinase domain	334	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja4g0724	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Lja4g0724	649	MobiDBLite	consensus disorder prediction	136	156	-	-
	Lja4g0724	649	ProSiteProfiles	Gnk2-homologous domain profile.	141	251	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g0724	Lja-Chr4	5976479	5980488	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g0724	6	649	Receptor kinase-like Gene Family	AT4G05200	42.121	3.05e-178	521

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lja4g0724		Pkinase	1.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g0724	-		-	lja:Lj0g3v0113169.1	864.374