Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0711 ATGACTCAGCAGAATGTGGTTGTGGCCGAGACCAAATCAGGGATCAACACCGCTATCACCTCCATGGCTCCCAAACCGCCGGCGCCGCCTGGTGGCTACATTCCCATTCCACGGAGGAGGGTTCTCAAGAACCTTGAAATCAACGGTGGACAGAGAATCAACGCCTGGATTGACTCCATGAGAGCTTCTTCTCCCACTCACGCCAAATCAACTACTTCTTCTCTGGTTGAAGAACATAGCTCTTGGATTCTTCGCCACCCGTCTGCATTAGACATGTTTGAGCAGATTATGGATGCTGCAAATGGGAAGCAAATTGTTATGTTCCTTGACTATGATGGTACCTTGTCACCAATTGTCCAGGACCCTGACCGTGCTTTCATGTCGGATTCGATGAGAAAAACTGTGAGGAAACTTGCAAGGTGTTTTCCAACTGCTATAGTTAGTGGCAGATGCAAAGACAAGGTATACAATTTTGTTCGCTTGGCTGAGCTGTATTATGCTGGAAGCCATGGAATGGATATTTCAGGGCCTACAAGAGACTCAAAAAATCACAAGGACAAGAAAGCAGAAGCAGTTCTTTTTCAACCTGCTAGTGATTTTCTTCCAATGATGAATGAGGTGTACCATAGACTTGTAGAGAATACAAAATCAATTCCTGGTTCCAAGGTGGAGGACAACAAGTTCTGCCTCTCTGTTCATTTTCGCTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACACCAAGTTAGATCAGTGTTGAAAGAGTACCCTGAACTTCGTCTATCACAAGGAAGGAAGGTATTAGAGATTCGTCCTTCTATTAAATGGGACAAAGGGAAGGCCCTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTGTTTATATTGGGGATGATAAGACCGATGAAGATGCATTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCGAAATTTCCAAAAGACACTGCTGCATCATACTCTTTACAAGAACCCAATGAGGTTATGGACTTCCTTCAACGATTGGTGGAGTGGAAACAAGTGTCCCAGAGAAGACGTTAA 1092 0.4405 MTQQNVVVAETKSGINTAITSMAPKPPAPPGGYIPIPRRRVLKNLEINGGQRINAWIDSMRASSPTHAKSTTSSLVEEHSSWILRHPSALDMFEQIMDAANGKQIVMFLDYDGTLSPIVQDPDRAFMSDSMRKTVRKLARCFPTAIVSGRCKDKVYNFVRLAELYYAGSHGMDISGPTRDSKNHKDKKAEAVLFQPASDFLPMMNEVYHRLVENTKSIPGSKVEDNKFCLSVHFRCVDEKKWSELAHQVRSVLKEYPELRLSQGRKVLEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGFGILVSKFPKDTAASYSLQEPNEVMDFLQRLVEWKQVSQRRR* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0711 363 Gene3D - 202 363 IPR023214 -
Lja4g0711 363 Gene3D - 105 197 IPR023214 -
Lja4g0711 363 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 107 318 IPR006379 -
Lja4g0711 363 TIGRFAM T6PP: trehalose-phosphatase 103 353 IPR003337 GO:0003824|GO:0005992
Lja4g0711 363 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 363 IPR044651 GO:0004805|GO:0005992
Lja4g0711 363 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 363 - -
Lja4g0711 363 CDD HAD_TPP 106 346 - -
Lja4g0711 363 SUPERFAMILY HAD-like 106 355 IPR036412 -
Lja4g0711 363 Pfam Trehalose-phosphatase 108 342 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0711 Lja-Chr4 5869354 5871745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0711 96 360 Trehalose Biosynthesis Gene Families AT1G06410 25.352 6.65e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0711 K01087 - gmx:100794430 609.372