Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0709 ATGGCTACATATATAGATAGTTACAACAGCAGCAATATTACAATGGATCATTTCTCAGATCCATACAGTGAAGAGCTCATGAAAGCACTAGAACCTTTCATGAAAACTGATTCTTCTTCCACCTATCTCTCACCAGAACAATCACAATCACAATCATACTACCCTTCCATCTCCAATTCCCTACACTCACAACAATCTAGCAAATCCCAAACAAGCTTCATCGGGCTCAACCAACTCACCCCATCACAAATTCTTCAAATTCAAGCCCAATTCCACATCCAGCAACAGCAGCAGCACCACAAAACCGCCGCTGTAGCTTCCCTCAACCGCCACAAACAAACCCATTTGCAAGTTCCAGCCTATCTTACCCCGAAGCCCGTTCCGATGAAGCACGTTGGTGGCACACCCGCGGCGAAGCCCACGAAGCTCTACCGCGGGGTGAGACAGCGGCATTGGGGCAAGTGGGTCGCTGAGATCAGACTCCCCAAGAACCGAACCCGTCTCTGGCTTGGAACATTCGAAAAAGCAGAGGAGGCTGCATTGGCGTATGATAGCGCAGCGTATAAGCTGAGAGGCGAGTTCGCACGCCTCAATTTCCCTCATCTGAAGAAAGCGCACGTTTCCGGGGAGTTCGGTGATTACAAGCCTCTACCTTCCTCCGTCGATTCGAAGCTGAAAGCCATTTGTGAGAGCTTAGATGGAAAACAGGGGAACCCGAAAATGCAATTCAACTCTGTTGAAGATGTGAAGCCTGTGTTGCGTGTCCCTGTGGAGCTTGCAGGAATGGAATCTGATATGGAACACTTCAATGGTGAAGTAATTTATCCAGGGTTTGAGGATATTAAGGTGGAGAACGAGAATCCAGTGTTGTCTCCCCTGTCTGATGAATCCTCACCCTGTTCTTCTTCCCCTGAATCCGGTGTCACTTTCTTTGATTTCTCGGATTCAAACCAGTGGGATGAAGTGGAGAATTTTGGGTTGGAGAAGTACCCTTCTTTGGAAATTGATTGGGCAGCTTTATGA 1023 0.479 MATYIDSYNSSNITMDHFSDPYSEELMKALEPFMKTDSSSTYLSPEQSQSQSYYPSISNSLHSQQSSKSQTSFIGLNQLTPSQILQIQAQFHIQQQQQHHKTAAVASLNRHKQTHLQVPAYLTPKPVPMKHVGGTPAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFEKAEEAALAYDSAAYKLRGEFARLNFPHLKKAHVSGEFGDYKPLPSSVDSKLKAICESLDGKQGNPKMQFNSVEDVKPVLRVPVELAGMESDMEHFNGEVIYPGFEDIKVENENPVLSPLSDESSPCSSSPESGVTFFDFSDSNQWDEVENFGLEKYPSLEIDWAAL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0709 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 340 - -
Lja4g0709 340 ProSiteProfiles AP2/ERF domain profile. 143 200 IPR001471 GO:0003700|GO:0006355
Lja4g0709 340 SMART rav1_2 143 206 IPR001471 GO:0003700|GO:0006355
Lja4g0709 340 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
Lja4g0709 340 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Lja4g0709 340 Pfam AP2 domain 144 193 IPR001471 GO:0003700|GO:0006355
Lja4g0709 340 Gene3D AP2/ERF domain 143 201 IPR036955 GO:0003700|GO:0006355
Lja4g0709 340 MobiDBLite consensus disorder prediction 37 65 - -
Lja4g0709 340 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677
Lja4g0709 340 CDD AP2 142 202 IPR001471 GO:0003700|GO:0006355
Lja4g0709 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0709 Lja-Chr4 5851519 5853086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0709 5 340 AP2-EREBP Transcription Factor Family AT4G39780 46.491 4.62e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g0709 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0709 K09286 - gmx:100818839 337.035