Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0702 ATGCTTGATGGTGTTGTTGCATCCAGTAGTTATGGTAGTGAGAAAGATTCAGACAATGTTGGTCCTTCCTTAGGGTCAAATGTGATGCTGCTTGCTCAAGTAGTTAAGTTGCTGAGGCAAAAGTTTGAAAAACAAAAACAAATTTGTCGCACAGATCGTATTGTTTTCAAACTCTTTGGTAAAGAGCCGAGTGATTTTCCTCTTATACTTAGAGCACAGATTCTTGACTGGTTATCACACAGTCCTACTGATATTGAAAGCTACATACGACCTGGTTGTATTGTTTTGACAATTTATCTGCGCCAGGCTGAAGCTGTTTGGGAGGAAGATGGTGAAGCATGGTGGAAATTAGCGGACACACTCCTGGAAGTAGGGTAA 378 0.4101 MLDGVVASSSYGSEKDSDNVGPSLGSNVMLLAQVVKLLRQKFEKQKQICRTDRIVFKLFGKEPSDFPLILRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWEEDGEAWWKLADTLLEVG* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0702 125 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g0702 125 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 109 IPR044817 GO:0003677
Lja4g0702 125 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 46 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0702 Lja-Chr4 5807860 5809822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0702 50 109 SBP-box Gene Family AT2G47070 85.000 2.41e-32 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0329 2 2965004 2969663 Lja4g0702 4 5807860 5809822 ECH
Lja5g3211 5 62184129 62188030 Lja4g0702 4 5807860 5809822 ECH
Lja4g0702 4 5807860 5809822 Lja4g0702 4 5807860 5809822 ECH