Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0691 ATGGGATTGAGAGAACGTAGCAGCAATATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCATTAAGGCAGTTATTGGAGCTTATAGATACGCGAGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGATCAGGTTCGTTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAACTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCATTACTTGGTCTACTAAAGTCCAATTCTACTGAAGGGCAAATTGCTGCTGCAAAAACTATTTATGCTGTCTCTCAAGGTGGTGCAAAGGATCATGTTGGTTCAAAAATATTTTCAACTGAAGGAGTTGTACCGGTGCTCTGGGAGCAGCTGCAAACTGGCCTCAAGAAAGGAAATGTAGTTGAAAGTTTATTGACTGGAGCATTGAAAAATCTGTCCAGCAATACTGAGGGATTTTGGAGTGCAACAATACAAGCTGGTGGGGTCGACATATTAGTGAAGTTACTGGCAGCAGGGCAACCGAGCACTTTAGCTGATGTGTGCTTTTTACTTGCTGCTGTAATGATGGAGGATGCATCTGTTTGTTCGAAGGTGTTGACTGCAGAGGTGACAAAACAACTCTTGAAACTATTAGGCTCCGGTAACGATGACCCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAATGCAAAGAGGCAAGGCGAGAGATAGCCAATTCCAGTGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCTTTACAAGAGAATGCTATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGTCTTGATTCATGCACCTCACCTACTCAAGTTGCTGACACACTAGGAGCTTTGGCATCTGCTCTTATGATATATGATAACAAGGCAGAATCTACCAGAGCATCAGATCCTTTGGTAGTTGAGCAGACATTACTCAAACAATTTAAACAAAGCCTACCCTTCCTTGTTCAGGAACGGACCATTGAAGCTCTAGCTACTTTGTATGGTAATCCCGTACTCTCAACTAAACTGAAAAATTCTGATGCTAAACATTTGCTTGTTGGTTTAATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAGGCTCTCTTGACACTAAGCAAAAGTGAAGGCAGTCTATGGCATGCACTTCAAGGCCGTGAAGGAGTTCAGCTTTTGATATCTCTTTTGGGGCTCTCCTCGGAACAGCAGCAAGAATGTGCAGTTGCCCTGCTTTGCCTTCTATCTTATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGTATCCCTCCACTTGTTCAAATTTTGGAGACTGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCACAGCGAAGATATACGTGCTTGTGTCGAAAGTGCTGATGCTGTTCCTGCTTTGTTGTGGTTATTGAAGAATGGAAGCCCTAATGGGAAGGATATTGCAGCAAAGACCTTAAATCATCTAATTCATAAATCTGATACTACAACTATTAGTCAGCTTACAGCATTATTGACTAGTGATCTTCCTGATTCTAAAGTCTATATTTTCGATGCTTTGAGAAGTGTTCTTTCTGTTGCTCCTCTCAGTGACATTCTACGTGAAGGTAGTGCTGCCAGTGATGCATTTGATACCATGATAATGTTATTGAGCTCTACCAAGGAAGAAACCCAGGCAAAGTCTGCATCAGCACTTGCTGGAATTTTTGAAACGAGAAAAGATGTGCGTGAAAGTAGCATTGCTGTTAAAACTCTTTTGTCAGCCTTGAAATTGCTTAATGTTGAATCTGATAGTATCCTAATGGAGTCCTCACACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAAAACAGGGATGTAGCTGCTGTTGCTAGAGATGCATTATCCCCCCTAGTTGCTTTGGCTAACTCTCCACTTCTGGAAGTTGCAGAGATGGCAACATGTGCTGTAGCAAATCTTATTTTGGATGGTGAAATTGCAGAGAAAGCTGCTGTAGAGGAAGTTATCTTGCCTGCTACTCGAGTGTTACGTGAAGGCACAATTTCTGGAAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCGTAAAGTTGATTATGCTGTTACTGATTGTGTGAATCGTGCTGACACTGTTCTTGCATTAGTCTCCTTTTTAGATTCTTCTGTTAATGGATCTGTTGCCACATCAGAAGCTCTTGAAGCACTTGTCATTCTGTCCCGGTCGGGTGAGACCAGTGCACACATTAAGCCAGCTTGTGCAGTTTTAGCTGAATTCCCTAAAAGCATAATCCCAATAGTTCTATGTATTGTTGATTCAACACCAATGTTGCAAGATAAAACTATTGAGATATTATCCCAATTATGTAAGGATCAGCCTGTTGTTTTGGGAGACACTGTTGCTTCTTCCTCTGGATGTATATCTTTGATAGCTAAGAGGATAATTTCTTCCACAAATGTGAAGGTCAAAATTGGGGGGGTTGCACTTCTTACTTGTGCTGCAAAATCAAATCATCAGAGACTTGTGGAGGATCTCAATTTTTCAAACTTGTCTACTAACCTTATTCAGTCTCTAGTGGATATTCTTATTTCTGTACAGACTTCTTCGGATAATCAGGGTGACGGCGACAAGGAATTCATCAGCATATACCGGCACACAAAAGAAGAGTCCAACAGTAGTGAATCCAACACTGGTACCTCCATTATATGTGGTGCTGACTTAGCTATATGGTTACTGTCCATCCTTGCTTGTCATGATGAGAAAAATAAAATGGCAATTATGGAGGCTGGAGCAATTGATGTTCTCACTGACAGGATCTCAAGTTGTTTCTCACAATATTCTCAGATTGACAACAAAGAAGATAACAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTGTTTCAAGATAGAGATGTCATCCGGGCACATCCAACCACGAAATCTGTACCAGCACTTGCCAGTTTATTGAAGTCAGAGGAATCGGCAAACAAATATTTCGCTGCACAAGCAATATCTAGCCTTGTCTGCAATGGTAGCAGGGGAACACTTCTGTCTGTAGCAAATTCTGGGGCAGCAGGTGGACTAATTTCTTTGCTTGGTTGTGCTGATACTGATATACAGGATCTTTTGGAATTGTCAGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTAGAGAGGTTGTTTCGAGTTGATGACATAAGAGTTGGTGCGACTTCTCGGAAGGCAATACCTGCCCTGGTTGATTTGCTCAAACCGATTCCAGATCGCCCAGGTGCACCATTTTTGGCACTTGGGATTTTGACTCACCTTGGTAGAGATTGTCTGTCAAATAAGATTATAATGGTAGAGTCTGGGGCCTTAGAGGCACTTAATAAGTATCTTTCCCTGAGTCCTCAAGATGCAACTGAAGAAGCTGCAACCGATCTTTTAGGAATTCTATTTAGCAGCGTTGAGATACGGAAACATGAGTCAGCATTTGGTGCTGTTGCTCAACTTGTGGCTGTCTTACGTTTAGGAGGAAGAAGTGCAAGGTATAGTGCTGCTAAAGCCTTGGAAAGCTTATTTTCTGCTGACCACATTAGAAATGCAGAGATCGCTCGACAAGCTTTTCAACCCTTGGTGGAGATTCTTAATACTGGTTCAGAAAGGGAGCAGCATGCTGCTATTGCTGCATTGATTGGATTACTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATCCTTTCATCAAACTGTTCAATGGACCTCAAAGGAGATGCTGCTGAACTATGCTGTGCTCTCTTTGGCAACACAAGGATTCGGTCCACTATGGGTGCTGCACGCTGCGTTGAACCTCTAGTCTCTCTCCTTGCAACTGAGTTTAGTCCTGCTCAGCATTCAGTTGTTCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCCGCACATGGTGCAGTTGTTCCTCTTGTGAGCCTGCTGTCTGGTAGTAACTATATACTTCACGAGGCCACTTCTAGAGCTTTGGTCAAGTTAGGAAAAGATAGACCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGATATCTTAACTGATGCACCTGATTACCTAATTGCAGCTTTTGCAGAACTGTTGCGTATATTGACCAATAACGCTACCATAGCTAAGGGACCATCGGCTGCTAAAGTTGTTGAACCCTTGTTTTTGTTACTGAAAAGAGATGACTTTGGGCCTGATGGACAGCACAGTGCACTACAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTTCTGACTATTCATTGACTTCTCGCCAAGTTATTGAACCACTTATCCCTTTACTTGATTCTCCAATACCAGCAGTGCAACAGTTGGTTGCTGAGCTTCTTTCACATCTACTTCTAGAAGAACACCTTCAGAAGGATCCTGTGACACAGCAAGTAATTGGCCCACTTATACGAGTTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTAAGTATTGCACTGACATGGCCAAATGAAATTGCCAAAGAGGGCGGTGTAATTGAAATTTCCAAAGTGATATTGCAAGCCGATCCTTCTCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGTCAAGCATTTTGCAATTCAGCTCTGAATTCTACTTGGAAGTTCCTATAGCTGTGTTGGTAAGGTTGCTTCGATCTGGCTCGGAGAGCACAGTTATTGGTGCATTAAATGCTCTTCTGGTGTTGGAAAGTGATGATCGATTTAGTGCAGAAGCGATGGCTGAAAGTGGTGCTGTAGAGGCTCTCTTGGAGCTGCTAAGATCTCATCAGTGCGAGGAAACTGCGGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCCGAGAAACAAAAGTTACTAAATCAGCTATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAAGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTGTTCCAGAATGAGGGTCTTACTCGAACAGGTGATGCAGTTTCAGCTTGCCGTGCATTAGTAAATGTGCTTGAAGACAACCCGACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTCGTATTGGATCTGATAGGTTCAAGTGAACCAGAAACATCTGTTCAAGCTGCAATGTTTATTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGCGAAACAGTCAGAGCGATCACTGCCACTATTGAAAAAGATTTATGGGCCAGTGGAACTGTGAATGAGGAGTATCTGAAAGCCTTGAATTCTCTATTTAGCAACTTTCCACGGCTGAGAGCAACTGAACCAGCAACTCTTAGCATTCCCCACCTGGTTACATCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCGGCATTGGATGCGCTGTTTCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCAAGAGCTCAGTCAATTGCAGCTGCCGATGCTATTCCGTTGCTGCAGTATTTAATCCAGTCTGGTCCACCTCGGTTTCAAGAGAAGGCAGAACATTTATTGCAGTGTTTGCCAGGGACACTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTCGGCAACACTCCACCAAGGCTAACTAAGGTGGTCTCTACCGGGCCTAATCCGGAGTGGGATGAGAGCTTTTCATGGTCATTTGAGAGTCCTCCAAAAGGCCAGAAGCTACAGATTTCCTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAGATTGATCGTGTGGTAATGCTTGGAGCAGTAGCTGGCGAGTACACTCTGTTGCCTGCAAGTAAAAGTGGCCCTCCAAGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAAACAAATGATACAGTTTAG 6342 0.4303 MGLRERSSNMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSNSTEGQIAAAKTIYAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQTGLKKGNVVESLLTGALKNLSSNTEGFWSATIQAGGVDILVKLLAAGQPSTLADVCFLLAAVMMEDASVCSKVLTAEVTKQLLKLLGSGNDDPVRAEAAGALKSLSAQCKEARREIANSSGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLDSCTSPTQVADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFKQSLPFLVQERTIEALATLYGNPVLSTKLKNSDAKHLLVGLITMAANEVQDELIKALLTLSKSEGSLWHALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYIFDALRSVLSVAPLSDILREGSAASDAFDTMIMLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLLSALKLLNVESDSILMESSHCLAAIFLSIKENRDVAAVARDALSPLVALANSPLLEVAEMATCAVANLILDGEIAEKAAVEEVILPATRVLREGTISGKTHAAAAIARLLHSRKVDYAVTDCVNRADTVLALVSFLDSSVNGSVATSEALEALVILSRSGETSAHIKPACAVLAEFPKSIIPIVLCIVDSTPMLQDKTIEILSQLCKDQPVVLGDTVASSSGCISLIAKRIISSTNVKVKIGGVALLTCAAKSNHQRLVEDLNFSNLSTNLIQSLVDILISVQTSSDNQGDGDKEFISIYRHTKEESNSSESNTGTSIICGADLAIWLLSILACHDEKNKMAIMEAGAIDVLTDRISSCFSQYSQIDNKEDNSMWICALLLAILFQDRDVIRAHPTTKSVPALASLLKSEESANKYFAAQAISSLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTHLGRDCLSNKIIMVESGALEALNKYLSLSPQDATEEAATDLLGILFSSVEIRKHESAFGAVAQLVAVLRLGGRSARYSAAKALESLFSADHIRNAEIARQAFQPLVEILNTGSEREQHAAIAALIGLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCALFGNTRIRSTMGAARCVEPLVSLLATEFSPAQHSVVRALDRLVDDEQLAELVAAHGAVVPLVSLLSGSNYILHEATSRALVKLGKDRPACKMEMVKAGVIESILDILTDAPDYLIAAFAELLRILTNNATIAKGPSAAKVVEPLFLLLKRDDFGPDGQHSALQVLVNILEHPQCRSDYSLTSRQVIEPLIPLLDSPIPAVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVIGALNALLVLESDDRFSAEAMAESGAVEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLTRTGDAVSACRALVNVLEDNPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSEPETSVQAAMFIKLLFSNNTIQEYASSETVRAITATIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEHLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRLTKVVSTGPNPEWDESFSWSFESPPKGQKLQISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKTNDTV* 2114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0691 2113 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Lja4g0691 2113 Gene3D - 608 752 IPR011989 -
Lja4g0691 2113 Gene3D - 1339 1477 IPR011989 -
Lja4g0691 2113 Gene3D - 1657 1776 IPR011989 -
Lja4g0691 2113 SUPERFAMILY ARM repeat 381 689 IPR016024 -
Lja4g0691 2113 SMART C2_3c 1988 2084 IPR000008 -
Lja4g0691 2113 ProSiteProfiles C2 domain profile. 1968 2085 IPR000008 -
Lja4g0691 2113 SUPERFAMILY ARM repeat 1058 1526 IPR016024 -
Lja4g0691 2113 Gene3D - 8 363 IPR011989 -
Lja4g0691 2113 Gene3D - 757 1134 IPR011989 -
Lja4g0691 2113 Pfam C2 domain 1987 2078 IPR000008 -
Lja4g0691 2113 SUPERFAMILY ARM repeat 618 1020 IPR016024 -
Lja4g0691 2113 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 1 2108 - -
Lja4g0691 2113 Coils Coil 254 274 - -
Lja4g0691 2113 SUPERFAMILY ARM repeat 1537 1984 IPR016024 -
Lja4g0691 2113 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1987 2091 IPR035892 -
Lja4g0691 2113 Gene3D - 1135 1338 IPR011989 -
Lja4g0691 2113 Gene3D - 364 607 IPR011989 -
Lja4g0691 2113 CDD C2 1989 2079 - -
Lja4g0691 2113 Gene3D - 1480 1656 IPR011989 -
Lja4g0691 2113 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1153 1197 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 524 564 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 1269 1309 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 1814 1854 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 690 728 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 1355 1395 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 1186 1227 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 93 133 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 50 92 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 1438 1478 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 268 317 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 439 480 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 1526 1564 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 1396 1436 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 225 266 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 482 522 IPR000225 GO:0005515
Lja4g0691 2113 SMART arm_5 1687 1726 IPR000225 GO:0005515
Lja4g0691 2113 Gene3D C2 domain 1986 2112 IPR035892 -
Lja4g0691 2113 Gene3D - 1778 1985 IPR011989 -
Lja4g0691 2113 Pfam Armadillo/beta-catenin-like repeat 482 521 IPR000225 GO:0005515
Lja4g0691 2113 Pfam Armadillo/beta-catenin-like repeat 61 91 IPR000225 GO:0005515
Lja4g0691 2113 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 2108 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lja4g0691 2113 SUPERFAMILY ARM repeat 23 355 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0691 Lja-Chr4 5683951 5695265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0691 453 638 U-box Gene Family AT3G46510 32.000 1.25e-08 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0691 - - gmx:100794002 3581.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0691 4 5683951 5695265 Lja4g0691 4 5683951 5695265 ECH
Lja4g0691 4 5683951 5695265 Lja6g0298 6 7440466 7451461 PCT