Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0686 ATGAAGGCTCTCTCTGAGCTCTTCTATCAGCTCTACACCAAGATGATAGTCCTTCTGACATACATGCTAATAGATCTTATCCTCATCATCAGGTACCTGAAATCAGATACACCTCCAATTACCACCACCCAATTCCTCAATTTCATTGAAGAGAAGAACCCCACAACTAGCTACACCACAAGGCTGAAGAAGGAGGTAGAACAAAATGTAGACCTCGATTCCGGGACACAACGGCAACTGCAACCGCGACCGCAATTTAAAACCCTGGACTGTAGGGTGTGCTTATCTGAGTTTGTGGAAGGGGAAAAGGTGAGGAGCTTGAACTGTGACCACACATTTCACAAGGATTGCTTAGACAATTGGTTCTTGCAGGAGCAGTTTTGTGCTGCAACATGCCCTCTTTGCAGGAACAAAGTGTTGCCAGATGATGTTGTGGCTAAGTACCACCACCACCTGGTCCAGAATCAGGTGGAATATGATGAGAATGATGACCAGCTCTTTGTTTTGTTATCAGTGATAAGAGGTGGCAGCACTTTGCACAGATATCTGTGA 552 0.4529 MKALSELFYQLYTKMIVLLTYMLIDLILIIRYLKSDTPPITTTQFLNFIEEKNPTTSYTTRLKKEVEQNVDLDSGTQRQLQPRPQFKTLDCRVCLSEFVEGEKVRSLNCDHTFHKDCLDNWFLQEQFCAATCPLCRNKVLPDDVVAKYHHHLVQNQVEYDENDDQLFVLLSVIRGGSTLHRYL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0686 183 CDD mRING-H2-C3H2C2D_ZSWM2 91 136 - -
Lja4g0686 183 Pfam Ring finger domain 90 136 IPR001841 -
Lja4g0686 183 ProSiteProfiles Zinc finger RING-type profile. 91 136 IPR001841 -
Lja4g0686 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 141 IPR013083 -
Lja4g0686 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 178 - -
Lja4g0686 183 PANTHER - 1 178 - -
Lja4g0686 183 SUPERFAMILY RING/U-box 90 143 - -
Lja4g0686 183 SMART ring_2 91 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0686 Lja-Chr4 5648919 5649817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0686 90 147 C3H Transcription Factor Family AT1G15100 55.172 2.69e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0686 K16282 - gmx:102669811 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0686 4 5648919 5649817 Lja4g0686 4 5648919 5649817 ECH
Lja4g0686 4 5648919 5649817 Lja6g0305 6 7584038 7585197 PCT