Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0678 ATGACAGGGAAGAGAAACAACCAAACCAGCCCTGTGGGAAGTCCTACATCAGGGAACATCTCAGACGGTTCCAACTCAAAAGAGCAAGACAGGTTCCTCCCCATAGCCAACGTGAGCAGAATCATGAAGAAAGCACTCCCAGCCAATGCAAAAATCTCAAAGGAAGCAAAGGAAACAGTGCAGGAATGTGTCTCTGAGTTCATAAGCTTCATCACTGGTGAAGCCTCTGACAAGTGTCAGAGGGAAAAGAGGAAGACAATCAACGGTGATGATCTTCTCTGGGCCATGACAACCCTTGGATTTGAGAACTATGTTGGACCCTTGAAAGGGTACCTCAACAGCTACAGAGAAACTGAGGGAGAGAAGAGTAATAACTGTTCTGTAGCTAAACCAGAGGATCATGATGATGCAGGGGTAGTTGAAATCAACAACAAAATGCTTCATTCTTCTGTGGACTTTGCAACTAGCTTCAATGGTGGTGGTGGATTCTATAGTTCTTCTTCTGTTGGGTCTCAACAACTAGCCCCAAAGACTACTAGCTTCCAAGAGATTGGAGGGAATAATATCAGAGGCTATAGTGAAATTAGTTCAATGAACAGGGCAATTGCTCAAAGTGTGGCCAGTGGTGATCAAGATGCAAGTGGTAATAGAATGATGCCATATAGGGTTCAATGGTAG 678 0.444 MTGKRNNQTSPVGSPTSGNISDGSNSKEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKGYLNSYRETEGEKSNNCSVAKPEDHDDAGVVEINNKMLHSSVDFATSFNGGGGFYSSSSVGSQQLAPKTTSFQEIGGNNIRGYSEISSMNRAIAQSVASGDQDASGNRMMPYRVQW* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0678 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 179 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja4g0678 225 Gene3D Histone, subunit A 20 147 IPR009072 GO:0046982
Lja4g0678 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 14 179 - -
Lja4g0678 225 MobiDBLite consensus disorder prediction 1 32 - -
Lja4g0678 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Lja4g0678 225 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja4g0678 225 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Lja4g0678 225 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Lja4g0678 225 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Lja4g0678 225 SUPERFAMILY Histone-fold 29 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0678 Lja-Chr4 5579764 5580805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0678 17 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.321 1.95e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja4g0678 CBFD_NFYB_HMF 4.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0678 K08065 - gmx:100810059 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0678 4 5579764 5580805 Lja4g0678 4 5579764 5580805 ECH