Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0672 ATGGTTGTTGGTGTGGCAATTTTGATTATATTTGTTCTGGGGATTATTGTGACCCTGCGGTTCTGGTTTACAGAAAGGCTTCCATACGAGGAGAGGGGCACAAGTGAAAAATCAAAATCCAAAAAAAAGAAAAATAAAAAGAAAGGTAAACAGATCATAAGTGATCTGATTGATAACGGTGGACAGGGATCAAATACGCAGATAGGTAACGATGGGTTGACAGATGTTACACAACTGACAATATCTGAAGATCAACTAGGACTTGGATCAAATGGCACTGTGATTTATGGAGGCACATATGGATATGCAAAGAGACCAGTAGCAGTGAAGAAAATTATTAATGACCATCACAAAGAAGCGATTGACGAAATGGAAATTTTGATGAAGTCAGACAGTCATGAGAACATAATTAGGTTCTTTGATATAAAAGTGGATAACGACTTCCACTACATTATATTGGAGAAGTGCGACTGTAACCTCGGAGAACTGATTCGGTACTTCTCACCGGTTTCACCAAGCTCTTCCAGCCACCGAGGTTCTAATGATTTTCTTGAAAGAGTTAGAAGAGAATTGAATCCAGATCTAGAGTGTAGTAATGGAGCGACTTCTCCTCTCTTAATGAAGTTACTCAAAGAAATAGTGGCGGGGCTAAGACATCTGCATGAGCTAAATATCATACACGGAGACATCACACCGGAAAATATTTTAGTAGTCAGAGAGCGGAACACACTGTGTATTAGAATAGCTGATATGGGCATCAGCAGAGCACTTCCGGTGGGTCAAAGTTCACTAGCAAAGAAGAATTCAGGCATGGGAAGTGTTGGCTGGATGGCACCGGAAGTCCTTTCTAGTTCACGCCAGAAGCTTGTGGTTGACTCCTTTAGTCTAGGTTGTCTAATATTTTTCTGTTTAACTAGTGGGGGACACCCCTTTGATCCGTTGTTGGAACTGCAGAAAAATATCATGTGTGGTGTAAGTAATATTTCCGCTGTTCAGCATTCGCCGGAAGCCTTTCACTTAATTGAAGGCTTATTAGAACCTAATGTTGAGCGAAGGTAG 1059 0.4089 MVVGVAILIIFVLGIIVTLRFWFTERLPYEERGTSEKSKSKKKKNKKKGKQIISDLIDNGGQGSNTQIGNDGLTDVTQLTISEDQLGLGSNGTVIYGGTYGYAKRPVAVKKIINDHHKEAIDEMEILMKSDSHENIIRFFDIKVDNDFHYIILEKCDCNLGELIRYFSPVSPSSSSHRGSNDFLERVRRELNPDLECSNGATSPLLMKLLKEIVAGLRHLHELNIIHGDITPENILVVRERNTLCIRIADMGISRALPVGQSSLAKKNSGMGSVGWMAPEVLSSSRQKLVVDSFSLGCLIFFCLTSGGHPFDPLLELQKNIMCGVSNISAVQHSPEAFHLIEGLLEPNVERR* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0672 352 PANTHER IRE1-RELATED 30 352 IPR045133 GO:0004521|GO:0004674|GO:0030968
Lja4g0672 352 SUPERFAMILY Protein kinase-like (PK-like) 84 352 IPR011009 -
Lja4g0672 352 Pfam Protein kinase domain 83 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0672 352 ProSitePatterns Protein kinases ATP-binding region signature. 86 111 IPR017441 GO:0005524
Lja4g0672 352 ProSiteProfiles Protein kinase domain profile. 80 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0672 352 PANTHER SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1B 30 352 - -
Lja4g0672 352 SMART serkin_6 80 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0672 352 Gene3D Transferase(Phosphotransferase) domain 1 197 352 - -
Lja4g0672 352 ProSitePatterns Tyrosine protein kinases specific active-site signature. 225 237 IPR008266 GO:0004672|GO:0006468
Lja4g0672 352 Gene3D Phosphorylase Kinase; domain 1 66 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0672 Lja-Chr4 5539050 5540513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0672 18 321 MAP Kinase Kinase Kinase AT4G38470 25.545 2.86e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Lja4g0672 Pkinase 8.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0672 K08852 - bvg:104901015 234.572