Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0669 ATGGCGGCGAAGCAGAGAACCAAGAGGGTTACCAGAAACCCCGATTTGATAAGGGGAATCGGAAAGTACTCGAAGTCGCAGATGTACCACAAGAGGGGTATCTGGGCTCTCAAGGCCAAAAACGGCGGCGCTTTCCCTCACCACGATCCCAAACCCAAACCTGAAGCTCCTGCTGTGAAGGCCCCCAAATTTTACCCTGCTGATGATGTTAAGAAGCCCCTTCTTAACAAGCATAAGCCTAGACCCACTAAGCTCAGGGCTAGCATTACTCCTGGGACAGTTCTGATTCTTCTTGCTGGGAGGTTTAAGGGAAAGAGGGTTGTGTTTTTGAAGCAGCTTCCTTCTGGGTTGCTTCTGGTAACTGGTCCTTACAAGATCAATGGAGTTCCTTTGAGAAGAGTGAATCAGTCCTATGTGATTGGCACATCAACCAAAGTAGATGTATCTGCTGTTAACGTGGATAAATTTGATGACAAGTACTTTTCAAAGGAAGCCCAGAAGAAGAAGAAGAAGGGAGAAGGAGAGTTCTTTGAGGCAGAGAAAGAGGAGAAAAATGCATTGCCTCAGGAGAAGAAAGATGACCAGAAAACTGTGGACTCTTCATTGATAACAGCCATTGAGGGTGTTCCAGAGTTGAAGGCTTATCTCGGTGCTAGGTTTTCTCTTAAGTCTGGCATGAAGCCACATGAGCTACTCTTCTAG 702 0.4658 MAAKQRTKRVTRNPDLIRGIGKYSKSQMYHKRGIWALKAKNGGAFPHHDPKPKPEAPAVKAPKFYPADDVKKPLLNKHKPRPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPYKINGVPLRRVNQSYVIGTSTKVDVSAVNVDKFDDKYFSKEAQKKKKKGEGEFFEAEKEEKNALPQEKKDDQKTVDSSLITAIEGVPELKAYLGARFSLKSGMKPHELLF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0669 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
Lja4g0669 233 Gene3D - 87 171 IPR014722 -
Lja4g0669 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Lja4g0669 233 CDD KOW_RPL6 81 233 IPR041997 -
Lja4g0669 233 MobiDBLite consensus disorder prediction 172 198 - -
Lja4g0669 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lja4g0669 233 MobiDBLite consensus disorder prediction 42 61 - -
Lja4g0669 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lja4g0669 233 Pfam Ribosomal protein L6, N-terminal domain 3 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0669 Lja-Chr4 5502217 5504479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0669 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 79.399 6.51e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0669 K02934 - gmx:100784101 380.948