Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0667 ATGGACCTCGCCGCCAAGCTCCACCACCTCACCGCCACACCCAAACCTTCTCTTCACCCACTCACCAATCGCCCCCTCACTCACACCAACCGCTTCTTCACCCCCAAAAACCCACCCAATTTCGACGCCGCATGTCGTTTATCCGCCGTCACCGCCGAAACGACAACCACGACCCAACAAAACGACGACATCGAGTCCCTCTTCTCCGACACCTCCGTCGAACCCAACAGAAAACGCGGGAAAAACCAATCCCACACTCGCGCCGGCGCTTCGACAGTCTCCTCCGGCGTGAAGCTAGAAAGCATCAGCAAAAGCTACAAGGGTGTCACCGTGTTGAAGAATGTGAGCTGGGAAGTGAAGAAGGGTGAGAAAGTGGGTTTGGTCGGTGTCAACGGCGCCGGGAAAACGACCCAGATGAGGATAATCGCGGGTCAGGAAGACCCGGATTCGGGAAACGTGATTAAGGCGAACCCGAACATGAAGGTTGCGTTTCTGAGCCAGGAGTTTGAGGTGGCGCCGAGCAGGACGGTGAGGGAGGAGTTTCTGAGCGCTTTCAAGGAGGAGATGGAGATATCTGGGAGGATGGAGAGGGTGCAGAAGGCGCTGGAGGGTGCTGTGGATGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTGGATTTGCTTCAGGGAAAGGCTCAGGCGGTGGACTTGGATGAGGTGGATGCTAAGGTTGATAAGTTGATGCCGGAGCTTGGTTTTGCTCCTGAGGATTCTGAGAGGTTGGTGGCTTCTTTTAGCGGCGGGTGGCAGATGAGGATGTCTCTTGGCAAGATTTTGCTCCAGGACCCAGATTTGTTACTGTTGGATGAGCCTACGAATCACCTTGATCTAGACACCATTGAGTGGCTTGAAGATTATCTTAGCAAGCAGGATGTTCCAATGGTTATCATTTCCCATGACAGGGCTTTTCTTGATCAGCTGTGCACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAACTATTCTCAGTATGTGGTTTCAAAGGCGGCATGGATTGAAGCACAGTTTGCTGCATGGGAGAAGCAACAGAAAGAAATTGAACATACAAAGGGCTTAATAAATAGGCTAGGTGCTGGAGCGAATTCTGGCCGTGCTTCATCTGCTGAGAAGAAGCTAGAGAAACTTCAGGAGGAAGAACTAGTGGAGAAGCCGTTTCAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGAAGTGGGAGATCTGTTGTAACAATAAAGAACTTAGAATATGGCTTTGAGGATACGGTGCTTTTCGAAAAGGCAAATCTGGCAATTGAAAGAGGAGAAAAAATTGCCATTATTGGTCCCAATGGATGTGGCAAGAGTACTTTACTGAAATTAATAATGAGTTTACAAAAGCCGGTTGGGGGTGAAGTTATGCTTGGGGAGCATAATGTATTACCTAACTATTTTGAGCAAAATCAGGCAGAGGCACTTGATCTGAACAAGACAGTGCTTCAGACAGTAGAAGAAGCTGCAGAGGATTGGAGGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTCAAATCTGATATGCTTGACAGGAAAGTTTCACTATTGAGTGGTGGTGAGAAGGCACGCCTGGCATTTTGTAAATTTATGGTAAAACCATCAACTCTACTTGTGCTAGATGAACCAACCAATCACTTGGATATCCCTTCTAAAGAAATGCTTGAGGAGGCGATAACCGAGTACCAGGGCACTGTTATCACAGTGTCTCATGATCGATACTTTATAAAGCAGATAGTTAATAGAGTTATAGAAGTCAAAGATGGTGCTTTACAGAATTACGCAGGTGATTACAATTATTACTTAGAGAAGAATCTTGATGCTAGGAATAGAGAGCTTGAACGTGAGGCTGAGCTAGAGGCCAAAGCTCCAAAAGTGAAAGCCAAATCTAAAATGTCCAAGGCTGAGAAAGAAGCAAGGAAGAAACAGAAGATGCAGGCTTTTCAGGCAGCAAACCAAAAGTCTAAATCTTTGAAAAATGCAAAGAGATGGAATTGA 2076 0.4677 MDLAAKLHHLTATPKPSLHPLTNRPLTHTNRFFTPKNPPNFDAACRLSAVTAETTTTTQQNDDIESLFSDTSVEPNRKRGKNQSHTRAGASTVSSGVKLESISKSYKGVTVLKNVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGQEDPDSGNVIKANPNMKVAFLSQEFEVAPSRTVREEFLSAFKEEMEISGRMERVQKALEGAVDDLELMGRLLDELDLLQGKAQAVDLDEVDAKVDKLMPELGFAPEDSERLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEDYLSKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVVSKAAWIEAQFAAWEKQQKEIEHTKGLINRLGAGANSGRASSAEKKLEKLQEEELVEKPFQRKQMKIRFPERGRSGRSVVTIKNLEYGFEDTVLFEKANLAIERGEKIAIIGPNGCGKSTLLKLIMSLQKPVGGEVMLGEHNVLPNYFEQNQAEALDLNKTVLQTVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYQGTVITVSHDRYFIKQIVNRVIEVKDGALQNYAGDYNYYLEKNLDARNRELEREAELEAKAPKVKAKSKMSKAEKEARKKQKMQAFQAANQKSKSLKNAKRWN* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0667 691 Coils Coil 651 680 - -
Lja4g0667 691 CDD ABCF_EF-3 97 327 - -
Lja4g0667 691 MobiDBLite consensus disorder prediction 54 71 - -
Lja4g0667 691 ProSitePatterns ABC transporters family signature. 543 557 IPR017871 GO:0005524
Lja4g0667 691 Gene3D - 386 655 IPR027417 -
Lja4g0667 691 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 23 681 - -
Lja4g0667 691 Coils Coil 629 649 - -
Lja4g0667 691 MobiDBLite consensus disorder prediction 54 94 - -
Lja4g0667 691 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 23 681 - -
Lja4g0667 691 Pfam ABC transporter 326 413 IPR032781 -
Lja4g0667 691 CDD ABCF_EF-3 424 615 - -
Lja4g0667 691 MobiDBLite consensus disorder prediction 644 670 - -
Lja4g0667 691 Pfam ABC transporter 441 571 IPR003439 GO:0005524
Lja4g0667 691 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g0667 691 Pfam ABC transporter 112 287 IPR003439 GO:0005524
Lja4g0667 691 Gene3D - 94 378 IPR027417 -
Lja4g0667 691 ProSitePatterns ABC transporters family signature. 259 273 IPR017871 GO:0005524
Lja4g0667 691 SMART AAA_5 121 336 IPR003593 -
Lja4g0667 691 SMART AAA_5 448 616 IPR003593 -
Lja4g0667 691 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 639 IPR003439 GO:0005524
Lja4g0667 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 628 IPR027417 -
Lja4g0667 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 332 IPR027417 -
Lja4g0667 691 MobiDBLite consensus disorder prediction 644 691 - -
Lja4g0667 691 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 97 355 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0667 Lja-Chr4 5488701 5493335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0667 421 641 Calmodulin-binding Proteins AT2G36910 25.911 6.16e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0667 - - adu:107470294 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0667 4 5488701 5493335 Lja4g0667 4 5488701 5493335 ECH