Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0657 ATGGGTCCCCTTTCGCTGTCCGTCATGCTGCAGGACTCTGCCATTTCATCACCAGATGCTTGTACTAAGAGAAAACAGAACATGCTTCTGAGAAATTCTTTTGCATCAGTTACCATTGGAGAGGAGAAGCCCTTTGACTTCTTACGCACTTTATTTGAGGGTGTTATTGCTGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATTGACACTATAAAAACACGTCTACAGGCTGCTCGTGGAGGAGAAAAACTATTATTGAAAGGGCTTTATTCTGGATTGGCAGGGAACCTTGTTGGCGTCTTACCGGCGTCTGCTCTATTTGTTGGAGTTTATGAACCCATGAAACAGAAATTGCTGAGGATATTTCCTGAAAATCTGAGTGCTTTTGCTCATTTAACCGCAGGTGCCATAGGGGGCATTGCCGCTTCATTGGTTCGTGTCCCGACTGAGGTTGTTAAGCAACGAATGCAAACTGGGCAGTTTGCTTCAGCTTCTGGTGCTGTTCGATTTATTGCTGCTAAGGAGGGCTTTAAAGGATTTTATGCCGGGTATCGGTCGTTTTTATTGCGGGATTTGCCTTTTGATGCCATTCAGTTTTGCATCTATGAGCAGATTCGATTAGGTTATATGCTTGCGGCACGAAGAAATCTGAATGATCCAGAAAATGCAGTTATTGGTGCATTTGCAGGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAGGGATCTGCAAACCAGTATAAGGGAATCGTTGATTGTGTTCAAACCATTATGAAGGAAGAGGGACCTCGTGCCTTTCTGAAGGGCATTGGGCCAAGGGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGAGTTCAAAACGTTTTCTTGTGGAGAGGCGTCCTACACTAGCTCAGCACTCAAAGTCAGAAAGAAACAAAGATTAA 981 0.4414 MGPLSLSVMLQDSAISSPDACTKRKQNMLLRNSFASVTIGEEKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLLLKGLYSGLAGNLVGVLPASALFVGVYEPMKQKLLRIFPENLSAFAHLTAGAIGGIAASLVRVPTEVVKQRMQTGQFASASGAVRFIAAKEGFKGFYAGYRSFLLRDLPFDAIQFCIYEQIRLGYMLAARRNLNDPENAVIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVQTIMKEEGPRAFLKGIGPRVLWIGIGGSIFFGVLESSKRFLVERRPTLAQHSKSERNKD* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0657 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 221 307 IPR018108 -
Lja4g0657 326 SUPERFAMILY Mitochondrial carrier 52 302 IPR023395 -
Lja4g0657 326 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 7 319 - -
Lja4g0657 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 121 IPR018108 -
Lja4g0657 326 Gene3D Mitochondrial carrier domain 49 322 IPR023395 -
Lja4g0657 326 PRINTS Mitochondrial carrier protein signature 54 67 IPR002067 GO:0055085
Lja4g0657 326 PRINTS Mitochondrial carrier protein signature 185 203 IPR002067 GO:0055085
Lja4g0657 326 PRINTS Mitochondrial carrier protein signature 230 252 IPR002067 GO:0055085
Lja4g0657 326 PRINTS Mitochondrial carrier protein signature 67 81 IPR002067 GO:0055085
Lja4g0657 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 130 212 IPR018108 -
Lja4g0657 326 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 7 319 - -
Lja4g0657 326 Pfam Mitochondrial carrier protein 51 85 IPR018108 -
Lja4g0657 326 Pfam Mitochondrial carrier protein 130 211 IPR018108 -
Lja4g0657 326 Pfam Mitochondrial carrier protein 225 310 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0657 Lja-Chr4 5432713 5438223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0657 128 313 Chloroplast and Mitochondria Gene Families AT1G07030 30.366 7.13e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0657 K15111 - gmx:100811130 577.785