Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0647 ATGGGATGCTTTAGCAGTAAGAACGCTCCCCCTCGAAACCGAAATTTGGAGAGGTTAAAACGAGAAAATGAGTATGCAAAAAGAGAGCATTCAAGGTCACATTCCTCTAAGAACGTGGAAACAAAGAAGAGAGTAGTCACTGTGAGTCATCAAAAGACTGCTTCAGGTGGCGGTGAAGGAGGAGAAGAAGATGGGAATGATAAGGCGAAGGAAAATGTTGCTAAGAATGATGAGAAGAGTGACGTTGGGAATGTTTCGGGCAGGTCTGAGGAGAAGAGGAAGATTGCAAGCAAGGAAGATGTTGATGGGTGGCCAAAATGGCTGGTTGATAATATCCCTGCAAACGTTTTGGCTACTTTGGTTCCCAAGAGTGCTGATTGCTATGAAAAACTCGGAAAGGTAGGACGTGGAACATATAGCAATGTATACAAAGCCCGAGATAAGGACACTGGAAAGATTGTTGCTTTGAAGAAGGTACGGTTTGACACATCTGATTCAGAAAGCATCAAGTTCATGGCAAGAGAGATCATGATACTGCAGACACTGGATCATCCCAATGTCATCAAACTCAGAGGATTAGCAACTTCAAGGATGCAGTATAGTCTTTATCTAGTCTTTGATTACATGCAATTTGACCTTACCAGAATTATCTCCCGCCCTGGGGAGAGACTCACTGAACCACAGATCAAATGTTACATGAGGCAGTTGCTATTGGGGCTTCAGCATTGTCATGAGAGGGGAGTTATGCACCGAGATATAAAAGCTTCTAACTTGTTAATAGATAGAAGAGGGGAGCTCAAACTTGCAGATTTTGGGCTTGGACATTCTCCTGCTACTAAAACTGAAGGGCCTCTTACAAATCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACTGATTATGATTATAGCATCGATCTCTGGAGTGCAGGATGTCTTTTGGCTGAGATGTTCATTGGAAGACCAATTATGCCTGGGAGGACAGAGATTGAACAACTCCACATGATCTTCAAACTTTGTGGTTCACCTTCAGACAATTACTACAAAAAGATGAAGCTAATGACGAGCTACCGTCCACCACAGCATTACAGAGCTAGTTATGAAGAAAAGTTCCGGGATTTTCCTTCCTCCACTCGTGCTCTCTTGACCACACTACTTGATTTAGATTCTGGCTGCCGTGGCGACGCTGCCTCAGCTCTTGAAAGTGAATTCTTCAAATCTAGTCCATTAGCATGTCAGATTTCAGAGTTACCAACAATCTACAATGAAGAGGATGAACGGTTACATACCAAGAGACGCAAAAGGCGCAAGCATTTGGACAAGGACAAAAGGCAAGTATCTAAATCAAGAACAAGCAATGTAAGCCTATCAGGAAAGAACCAAATTGCTAAGCAAAGCAAGGTAGAGTCAGAACGATCAAAGGAGGAGAAGAGTGTGGAAAACAAGAAAGGTCAAGAGTTGTGGACCAGTGGAAGTAGCAGATCATCTCAATTTATGAACGAAGTGAACATGAACTCATCAATATCCCCAGTTTTTCTCAACAATGGGAGAAAATCCCCCAAGACTGAGGGTCATCCTAATGCTCTTAAGAACATTAAGAACTACACCCTCTTACAGGCCTCTATTATTGATATGATTAACCGCAACGAAGGCAATGAATTTGGCCTAATTCGCAAGTCTTTTTCTACTATGGATTTTAAGCGTGCTCCAGAGAAGTTGTCAAGTCTAAATGGATCAGGTGAATATGACCCTTGGGTGTATGAAATATGA 1785 0.4241 MGCFSSKNAPPRNRNLERLKRENEYAKREHSRSHSSKNVETKKRVVTVSHQKTASGGGEGGEEDGNDKAKENVAKNDEKSDVGNVSGRSEEKRKIASKEDVDGWPKWLVDNIPANVLATLVPKSADCYEKLGKVGRGTYSNVYKARDKDTGKIVALKKVRFDTSDSESIKFMAREIMILQTLDHPNVIKLRGLATSRMQYSLYLVFDYMQFDLTRIISRPGERLTEPQIKCYMRQLLLGLQHCHERGVMHRDIKASNLLIDRRGELKLADFGLGHSPATKTEGPLTNRVVTLWYRAPELLLGSTDYDYSIDLWSAGCLLAEMFIGRPIMPGRTEIEQLHMIFKLCGSPSDNYYKKMKLMTSYRPPQHYRASYEEKFRDFPSSTRALLTTLLDLDSGCRGDAASALESEFFKSSPLACQISELPTIYNEEDERLHTKRRKRRKHLDKDKRQVSKSRTSNVSLSGKNQIAKQSKVESERSKEEKSVENKKGQELWTSGSSRSSQFMNEVNMNSSISPVFLNNGRKSPKTEGHPNALKNIKNYTLLQASIIDMINRNEGNEFGLIRKSFSTMDFKRAPEKLSSLNGSGEYDPWVYEI* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0647 594 MobiDBLite consensus disorder prediction 13 47 - -
Lja4g0647 594 SMART serkin_6 128 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0647 594 Gene3D Phosphorylase Kinase; domain 1 117 210 - -
Lja4g0647 594 PANTHER CELL DIVISION PROTEIN KINASE 77 547 - -
Lja4g0647 594 ProSiteProfiles Protein kinase domain profile. 128 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0647 594 SUPERFAMILY Protein kinase-like (PK-like) 122 415 IPR011009 -
Lja4g0647 594 MobiDBLite consensus disorder prediction 430 499 - -
Lja4g0647 594 MobiDBLite consensus disorder prediction 454 469 - -
Lja4g0647 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Lja4g0647 594 MobiDBLite consensus disorder prediction 61 96 - -
Lja4g0647 594 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Lja4g0647 594 Gene3D Transferase(Phosphotransferase) domain 1 211 452 - -
Lja4g0647 594 MobiDBLite consensus disorder prediction 1 96 - -
Lja4g0647 594 PANTHER CYCLIN-DEPENDENT KINASE 77 547 - -
Lja4g0647 594 MobiDBLite consensus disorder prediction 470 488 - -
Lja4g0647 594 Pfam Protein kinase domain 128 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0647 Lja-Chr4 5346296 5350773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0647 123 468 Core Cell Cycle Gene Families AT5G10270 44.054 2.70e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja4g0647 Pkinase 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0647 K08819 - gmx:102667260 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0647 4 5346296 5350773 Lja4g0647 4 5346296 5350773 ECH