Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0641 ATGCCAATGATGTTTCATGGTTTCAATAGGGAGAAAGAGATGTCTGCAATGGTTTATGCTCTGACTCGTGTTATCTGTGGTGATGAGGAGGAGCATGGTGGTTATGATCATCAGAAAATGGAACATAGTGCATTTGGAGGTGGTGGTGATGGTGATGATGCTAATTTTCATGTGACACCAAACATAGCTTCTTGTTCTGCAACACCATCTTATGGTGGTGACAGTTTTTCCCTCAAGAGAAGGAGGGAAGATGGTGATTTCTCATGCAGAGCTTCACCCCCTGCTATTCCCCCAATTGCAGAACGTTCAAGCAACTTGACCAACACAGCAACAACAAAAATAAGCCCAATGGTGAAACCAGTATACGAATACAGAACAGAGAATGTGAGGGAGGAAACAGAGCAACAACCGAAGAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGGAAGTGGGCTGCAGAGATCAGAGACCCTTTCAAAGCTGCAAGAGTCTGGTTAGGAACATTCAACACAGCTGAAGAAGCAGCCAGAGCCTATGATCAAGCTTCACTGCGATTTAGAGGCAACAAGGCAAAACTCAACTTCCCTGAAAATGTGAGGCTCCTACAACAACCTTCCATCAATCAACCAACTACCCATTTCAGCAATTCAAATTCTTCAGAGCCAATAGTTCATGCAGAAGCTCAACACCACACTTTTCAGGGTTCCAGTGGTTCCAATTCAAGCAACTTTTATGACTATTCTCCTATGAGTTTATATGATCAGGCAAATGTGTCATCAACCATGGCTTCTCATCATCTTCAATCTTCCTCATCATCATCATCATCATATTCTTCTATGTTTGCTTCTTCTGTGAGTTCTCTGCAAGAAGTTTCAGTTCCTTCGGTTTATTCTACTCAGCTGCCAGCACAGTATTCTGTCCATAGCTCCTCTCCCTCTGGCTCTGGCTGA 954 0.4382 MPMMFHGFNREKEMSAMVYALTRVICGDEEEHGGYDHQKMEHSAFGGGGDGDDANFHVTPNIASCSATPSYGGDSFSLKRRREDGDFSCRASPPAIPPIAERSSNLTNTATTKISPMVKPVYEYRTENVREETEQQPKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFNTAEEAARAYDQASLRFRGNKAKLNFPENVRLLQQPSINQPTTHFSNSNSSEPIVHAEAQHHTFQGSSGSNSSNFYDYSPMSLYDQANVSSTMASHHLQSSSSSSSSYSSMFASSVSSLQEVSVPSVYSTQLPAQYSVHSSSPSGSG* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0641 317 PRINTS Ethylene responsive element binding protein signature 141 152 IPR001471 GO:0003700|GO:0006355
Lja4g0641 317 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Lja4g0641 317 CDD AP2 140 199 IPR001471 GO:0003700|GO:0006355
Lja4g0641 317 Gene3D AP2/ERF domain 139 199 IPR036955 GO:0003700|GO:0006355
Lja4g0641 317 ProSiteProfiles AP2/ERF domain profile. 140 197 IPR001471 GO:0003700|GO:0006355
Lja4g0641 317 SMART rav1_2 140 203 IPR001471 GO:0003700|GO:0006355
Lja4g0641 317 PANTHER DNA-BINDING DOMAIN 33 307 IPR044808 GO:0003700|GO:0009873
Lja4g0641 317 Pfam AP2 domain 140 189 IPR001471 GO:0003700|GO:0006355
Lja4g0641 317 PANTHER DNA-BINDING DOMAIN PROTEIN 33 307 - -
Lja4g0641 317 SUPERFAMILY DNA-binding domain 140 198 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0641 Lja-Chr4 5304739 5306449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0641 138 202 AP2-EREBP Transcription Factor Family AT2G33710 80.000 2.77e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g0641 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0641 - - mtr:MTR_8g092460 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0641 4 5304739 5306449 Lja4g0641 4 5304739 5306449 ECH
Lja1g4561 1 59601641 59603383 Lja4g0641 4 5304739 5306449 ECH