Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0639 ATGGACTTCGACGAGTACGAGTACTTGGAGAAGACAGTGGAGGAAGACCGCGACCCCTCCAAGAAGAAGAAGAGTAGCGACAGCGCCGACAAGACCGAGAGGACTTATCGGAAGCGCGACCTCGAAGACGATCTCGACGGCGAAGAACGGCGGAGCCGGAGGTCGAGAGGCGACGACGAGAATGGCTCCAAGAAGGATCGTGACAGAGACCGAGACCGCGACCGTGACCATGACCGGGATCGAGAACGCCGCCACAGGGAGAGGGATGGGGATAGGAGTGGTAGAGACAAAGAGAAGGATAAGGATAGGGACAAGGATAGGGATAAGGATAAGGATAGGGAGAAGGAGAGGGAGAGGAGAGATAAGGAGAGGGAAAAGGAACGTGGTCTAAGAGATAAGGAGAGGGAGCGAGAGAGGGAGAAGGAGAAGGAGGAGAGGGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGAAAAGGAGAAGGAACCGGATTTCGCATCGAGAGATGGCAGGAGATTTAGGGATAAGAAAGAGGCTGGGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCTTAAAAGCCACAGAGAGAGACGTATATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCCAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTGATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATGCTTCCAGTGGGGCTGCTGGAGTAGCAGGACCATATGGAGCAGTGGACAGAAAATTATATGTGGGGAATCTTCACTTTAACATGACTGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGTCCGGTTGAGGTTGTACAATTGCCTCTTGACATGGAGTCAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGGAAGTTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACGGATCATGTTGGAAGCCAAGATGCCGCTGCAAAATCTGCAGACTTAGACGATGATGAAGGTGGATTGACTTTAAATGCTCAATCAAGGGCGTTGCTGATGCAAAGGCTGGCTGGCGCTGATATTTCAACAAGCGTTGGTGTGCCTATGGTGAATGGATCAGTTCCTGTTCAGCCCGCTTTTAGCTTGCCTATTGGTAATCCAGGTATTTTACCTGGTCAAGTATTGCCAGCACAAGTGCCTACCCCAGTGGTAGAACCTGTAGGTACCCCCAGCGAGTGTTTACTATTGAAGAATATGTTTGATCCAAGCACTGAGACGGAACCAGATTTTGATTTAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCGAAATATGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATCTGCGGTTTGATACAGTGGAAGGAGCCAGTGGTGCTCAACGAGCAATGCACTTGAGATGGTTTGCACGGAGGTTAATTTCAGCTATCTTCATGCAACCAGAGTTATATGAAGCCAAATTTAAAGGGGAATCTTGA 1674 0.4845 MDFDEYEYLEKTVEEDRDPSKKKKSSDSADKTERTYRKRDLEDDLDGEERRSRRSRGDDENGSKKDRDRDRDRDRDHDRDRERRHRERDGDRSGRDKEKDKDRDKDRDKDKDREKERERRDKEREKERGLRDKEREREREKEKEERERSRRSRSRSEREKEKEPDFASRDGRRFRDKKEAGEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDAAAKSADLDDDEGGLTLNAQSRALLMQRLAGADISTSVGVPMVNGSVPVQPAFSLPIGNPGILPGQVLPAQVPTPVVEPVGTPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFDTVEGASGAQRAMHLRWFARRLISAIFMQPELYEAKFKGES* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0639 557 SUPERFAMILY RNA-binding domain, RBD 294 546 IPR035979 GO:0003676
Lja4g0639 557 PANTHER CC1-LIKE SPLICING FACTOR 1 557 - -
Lja4g0639 557 SUPERFAMILY RNA-binding domain, RBD 186 276 IPR035979 GO:0003676
Lja4g0639 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
Lja4g0639 557 SMART rrm1_1 193 265 IPR000504 GO:0003723
Lja4g0639 557 SMART rrm1_1 295 368 IPR000504 GO:0003723
Lja4g0639 557 SMART rrm1_1 464 541 IPR000504 GO:0003723
Lja4g0639 557 TIGRFAM SF-CC1: splicing factor, CC1-like family 84 553 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lja4g0639 557 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 387 481 IPR029123 -
Lja4g0639 557 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 557 - -
Lja4g0639 557 CDD RRM3_RBM39_like 462 544 - -
Lja4g0639 557 Gene3D - 117 277 IPR012677 -
Lja4g0639 557 CDD RRM1_RBM39_like 193 265 - -
Lja4g0639 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Lja4g0639 557 MobiDBLite consensus disorder prediction 1 193 - -
Lja4g0639 557 Coils Coil 113 159 - -
Lja4g0639 557 Gene3D - 290 386 IPR012677 -
Lja4g0639 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 261 IPR000504 GO:0003723
Lja4g0639 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 366 IPR000504 GO:0003723
Lja4g0639 557 MobiDBLite consensus disorder prediction 10 191 - -
Lja4g0639 557 CDD RRM2_RBM23_RBM39 296 368 - -
Lja4g0639 557 Gene3D - 458 556 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0639 Lja-Chr4 5287982 5293767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0639 266 367 Eukaryotic Initiation Factors Gene Family AT4G34110 33.981 1.54e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0639 K13091 - gmx:100793461 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4557 1 59539843 59546960 Lja4g0639 4 5287982 5293767 ECH
Lja4g0639 4 5287982 5293767 Lja4g0639 4 5287982 5293767 ECH
Lja4g0639 4 5287982 5293767 Lja1g4557 1 59539843 59546960 PCT