Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0635 ATGGCCAAATCACCTGAAAGTGAACTCCCTCTCAAAGCTTTTGGTTGGGCTGCTAGAGACACTTCTGGTGTCCTGTCTCCCTTCCATTTCTCCAGAAGGGAAAATGGCGATGATGATGTTGCTATCAAGATACTGTTTTGTGGGGTTTGCCATTCTGATCTGCACACGATTAAGAACGATTGGGGTTTCACTACTTATCCTGTTGTTCCCGGGCATGAAATTGTTGGGGTTGTGACAAAAACTGGAAACAATGTGACAAAATTCAAGGTGGGTGATAAAGTTGGAGTTGGTGTGATAGTGGACTCTTGCAAGTCATGTGAGAATTGTGATCAGGATCTGGAGAATTACTGCCCTCAACCTGTGTACACCTATAATTCTCCTTACAATGGGACGCGAACCAATGGTGGCTATTCTGATTTTGTGGTTGTTCACCAGCGCTACGTGCTTCAATTTCCTGATAATTTACCCCTTGATGCGGGTGCACCACTACTGTGTGCTGGGATCACTGTGTATAGCCCAATGAAGTATTATGGGATGACAGAGCCAGGGAAACACTTGGGAGTGGCAGGGCTTGGTGGTTTAGGCCATGTTGCAATCAAATTTGGTAAAGCATTTGGGCTGAAAGTTACTGTCATCAGCACCTCTCCAAACAAGGAAGCTGAGGCCATTGAAAAGCTTGGGGCTGATTCTTTCCTTGTTTCCACTGATCCTGCCAAAATGAAGGCAGCTCTGGGAACCATAGACTATATCATAGACACAATATCTGCTTCTCATTCCCTGATTCCACTGCTTGGCCTACTGAAGCTGAATGGGAAACTGGTCACTGTGGGGTTGCCTGGCAAGCCTCTTGAGTTGCCTGTCTTTCCATTAGTTGCAGGGAGGAAGCTTGTAGGGGGAAGCAACTTTGGAGGGATAAAGGAGACTCAGGAAATGCTTGAATTCAGTGCAAAGCACAACATAGCTGCAGATATTGAGCTGATTAAGATAGATGAAATCAACACAGCCATGGAAAGGCTCAGCAAAGCTGATGTCAAATATCGCTTTGTGATTGATGTGGCCAACTCCTTCTCAAGCCTGTAG 1080 0.4574 MAKSPESELPLKAFGWAARDTSGVLSPFHFSRRENGDDDVAIKILFCGVCHSDLHTIKNDWGFTTYPVVPGHEIVGVVTKTGNNVTKFKVGDKVGVGVIVDSCKSCENCDQDLENYCPQPVYTYNSPYNGTRTNGGYSDFVVVHQRYVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKEAEAIEKLGADSFLVSTDPAKMKAALGTIDYIIDTISASHSLIPLLGLLKLNGKLVTVGLPGKPLELPVFPLVAGRKLVGGSNFGGIKETQEMLEFSAKHNIAADIELIKIDEINTAMERLSKADVKYRFVIDVANSFSSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0635 359 Gene3D - 16 352 - -
Lja4g0635 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Lja4g0635 359 CDD CAD1 14 351 - -
Lja4g0635 359 SMART PKS_ER_names_mod 23 350 IPR020843 GO:0016491
Lja4g0635 359 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 12 356 - -
Lja4g0635 359 Pfam Zinc-binding dehydrogenase 193 316 IPR013149 -
Lja4g0635 359 PANTHER ALDEHYDE REDUCTASE 12 356 - -
Lja4g0635 359 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Lja4g0635 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 320 IPR036291 -
Lja4g0635 359 Gene3D - 166 322 - -
Lja4g0635 359 SUPERFAMILY GroES-like 20 184 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0635 Lja-Chr4 5255566 5259525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0635 12 356 Monolignol Biosynthesis Gene Families AT2G21730 72.989 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0635 K00083 - gmx:100819684 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0635 4 5255566 5259525 Lja4g0635 4 5255566 5259525 ECH