Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0634 ATGGATTTGGATGATTTTCGATCCATATTGGATACTGCCGGCGTCGATGTTTGGGTGTTAATGGACGCCGCCATCGACGTCGCCTCCGTTGACCACGCCTCCGAGTTGCGCCGCCGCAGAGACGCAATCGTCGAGCGCCTTTACACGGCGGCGGCTCCGTCGCGCTGCGGAAACTGCGAGGCCGGTGATGGTGGTGCTGGAGAAGCACCACCGAAGCAGAGCAGTCCCTCAACGGAGGTGGAAGAGGAGGAGGAAAAGGATCCTTTCGGTGGCTTGTTCGATGATGAGCAGAAGAAGATTCTGGAAATCAAACTGCAACTTGAAGACCCAAACCAGTCTGAGGATTCATTGGTGGAGTTGCTTCAGAATCTTGCAGACATGGATGTTACATTCCAAGCATTAGAAGAGACTGACATTGGGAGGCATGTGAATCGTTTGCGGAAGCATTCGTCCAATGAAGTTAGGAGATTGGTCAAGCTACTTGTCAGGAAGTGGAAGGAACTTGTAGATGAATGGGTGAAGTTCAAGACACCGGGAGAAGCGGCGGCCACATCTGTTATGGGTGATGAAGACTCACCTCAGCAGAAAACCCCACAAAACGGGTATCATCAGATTCCTGATTTTTCATGCTCGCCAAATCCACACAATGGTAGTTTTGGGTTGGAGGGCAACAATAGTGTAGCTGAACCAAAGCCGAAAGCAATTCCACGCAAAGAAGCGCGCCCAAAACCGGCACCATCACCACCATCAGTCCCAACTCCTCAAAATAGACAGAGAGAACAGAGAGATAATAATCTGGAAGCGGAGAGACTTGCTTCAGCAAGAAAGAGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACAATTCAGGTGATGGACCTCCATGAGTTGCCAAAGCCAAAGAATAAGAATACCTTCTTTGCAAAGAACAAAGGCGGCGCCGGTTCTAATGGAAGGCACTGGTGA 981 0.4995 MDLDDFRSILDTAGVDVWVLMDAAIDVASVDHASELRRRRDAIVERLYTAAAPSRCGNCEAGDGGAGEAPPKQSSPSTEVEEEEEKDPFGGLFDDEQKKILEIKLQLEDPNQSEDSLVELLQNLADMDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSVMGDEDSPQQKTPQNGYHQIPDFSCSPNPHNGSFGLEGNNSVAEPKPKAIPRKEARPKPAPSPPSVPTPQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNKNTFFAKNKGGAGSNGRHW* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0634 326 MobiDBLite consensus disorder prediction 183 326 - -
Lja4g0634 326 MobiDBLite consensus disorder prediction 188 223 - -
Lja4g0634 326 SMART TFS2_5 100 171 IPR003617 GO:0005634
Lja4g0634 326 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 94 183 IPR035441 -
Lja4g0634 326 CDD TFIIS_I 97 170 - -
Lja4g0634 326 Pfam TFIIS helical bundle-like domain 120 169 IPR017923 -
Lja4g0634 326 MobiDBLite consensus disorder prediction 56 92 - -
Lja4g0634 326 MobiDBLite consensus disorder prediction 260 287 - -
Lja4g0634 326 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 98 178 IPR035441 -
Lja4g0634 326 ProSiteProfiles TFIIS N-terminal domain profile. 95 172 IPR017923 -
Lja4g0634 326 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 326 - -
Lja4g0634 326 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 326 IPR044790 -
Lja4g0634 326 Coils Coil 268 295 - -
Lja4g0634 326 Coils Coil 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0634 Lja-Chr4 5229309 5233173 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja4g0634 Med26 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0634 - - lja:Lj0g3v0292029.1 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0634 4 5229309 5233173 Lja4g0634 4 5229309 5233173 ECH
Lja1g4546 1 59388209 59391264 Lja4g0634 4 5229309 5233173 ECH
Lja4g0634 4 5229309 5233173 Lja1g4546 1 59388209 59391264 PCT