Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0625 ATGGCTGCCATGAACTCTAGTGTCCTGGCTTGTAGCTATGCAGGATGCTCTGACCTCAATGCAAAGCTCACTTCCATGCCTTCAGTTGCATTACCACCAAATGTCTCTTCTCACAAATTGCCTGTGATCAAGGCACAGGCAAGTGATGGAAGGAGAGGTGCCCTTGTTTTCTTGGCAGCTACCTTTTTCACAGCTGCAGCTTCAAATTCTCCTGCCAATGCTGGTGTCATTGAACAATACCTTGAAAAGAGCAAGGCCAACAAGGAACTGAATGACAAGAAGAGGTTAGCTACAAGTGGGGCAAATTTTGCAAGAGCATACACTGTTCAATTTGGGACTTGCAAGTTCCCTGAAAACTTCACTGGTTGCCAAGATCTAGCCAAGCAAAAGAAAGTGCCTTTTATTAGTGATGATTTGGAACTTGAATGTGAAGGAAAGGACAAATACAACTGTGGTTCTAATGTTTTCTGGAAATGGTGA 480 0.4375 MAAMNSSVLACSYAGCSDLNAKLTSMPSVALPPNVSSHKLPVIKAQASDGRRGALVFLAATFFTAAASNSPANAGVIEQYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYNCGSNVFWKW* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0625 159 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 44 159 IPR008796 GO:0009522|GO:0015979
Lja4g0625 159 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 159 IPR008796 GO:0009522|GO:0015979
Lja4g0625 159 Gene3D - 75 159 IPR044907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0625 Lja-Chr4 5171166 5172286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0625 1 130 Calmodulin-binding Proteins AT5G64040 64.085 1.40e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0625 K02701 - qsu:111999108 237.654