Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0624 ATGTATGCTTCTACTTCCTTCACTTCACAGCTTATCCATGATCTTCTTGTGGAAAATTCCCCACACACAAGAAAGCTACTTCTTCAATTTCCAATTGATCACCATCAAATTCAATCACCCACCTCTTCACCTTCCATGATGAACTCATCAACAACAGATTATTCATACCTCGGAAACCGCAAATTCGACGCGAACGTTGTGATGATACTTGCTGTCCTGTTGTGTGCTCTGATCTGCTCACTGGGGTTGAACTCCATCATAAAGTGTGGGTTGAGATTCTCCAACATAGCCATCAACGATTATAGCGGGACCAACAACCATAGCGCCTCGCCTCGATCGGCCAGCAAAGGGATCAAGAAGAAAGCTCTTAAGAAATTCCCCACAATGAGTTACACAGCAGAGTTGAAACTGAAACTCCCTGGTTTGGATACAGAGTGTGTGATTTGCCTCTCAGAGTTCACAGACGGAGAGAAGGTTCGTGTTTTGCCGAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAGTGGTTGAGTTCACACTCTTCATGCCCCAAGTGCAGACAGTGCCTTCTTGAGACTCAAAAGGTTGTTGGGTCATCACAAGTACAACCACAACAACAACTAGAAGCTGTGTTGCCAGTGCCAGAGGTCGTTATAAGGATTGAACCATTAGAGCCAGAAGGTGTGGAACGTAGCTATAGATGA 708 0.4477 MYASTSFTSQLIHDLLVENSPHTRKLLLQFPIDHHQIQSPTSSPSMMNSSTTDYSYLGNRKFDANVVMILAVLLCALICSLGLNSIIKCGLRFSNIAINDYSGTNNHSASPRSASKGIKKKALKKFPTMSYTAELKLKLPGLDTECVICLSEFTDGEKVRVLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLLETQKVVGSSQVQPQQQLEAVLPVPEVVIRIEPLEPEGVERSYR* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0624 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 192 IPR013083 -
Lja4g0624 235 SMART ring_2 146 187 IPR001841 -
Lja4g0624 235 SUPERFAMILY RING/U-box 140 194 - -
Lja4g0624 235 Pfam Ring finger domain 145 188 IPR001841 -
Lja4g0624 235 PANTHER RING-H2 FINGER PROTEIN ATL78 1 235 IPR044602 GO:0016567|GO:0016740
Lja4g0624 235 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Lja4g0624 235 CDD RING-H2_PA-TM-RING 145 188 - -
Lja4g0624 235 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0624 Lja-Chr4 5167278 5168233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0624 62 195 C3H Transcription Factor Family AT3G10910 53.623 3.84e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0624 K19040 - gmx:100780127 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0624 4 5167278 5168233 Lja1g4535 1 59243096 59244133 PCT