Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0623 ATGGATGTTTCAACTTCCTTCACTGCACACCTTATCCATGACCTTGCTGTGGAATACTCCCCCCATACAAGAAAGCTACTCCTTCAATTTCCACTTCACAATCAATTATCACCCACTTCCTCACCTTCCATTAAGAACTCAACAACAGATTCATACTTCGGAAACCGCGAATTCGATTCAAACGCTATCATGATACTTGCTGTCCTGTTGTGTGCTCTGATCTGCTCACTTGGCTTAAACTCCATCATTAGGTGTGGCTTAAGATTCTCCAACATAGTCATCAACGATTACAGCGGAACCAACAACAATAGCCCTTCACCTAGATTGGCCAACAAAGGAATCAAAAAGAAAGCCCTTAAGAAATTCCCCATAGTGAACTACACACCAGAGCTGAAACTGAAACTCCCTGGTTTGGACACAGAGTGTGTGATTTGCCTCTCAGAGTTCACAGACGGAGAGAAGGTGCGTGTTTTGCCGAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAGTGGTTGAGTTCACACTCTTCATGCCCCAAGTGCAGACAGTGCCTTCTTGAGACTAAAAAGGTTGTTGGGTCATCACAAGTACAACCACAACAACAACTAGAAGCTGTGTTGCCAGTGCCAGAAATTGTTATAAGGATTGAACCACTAGCGCCAGAAGGTGTGGAACGTAGCTATAGATGA 696 0.4397 MDVSTSFTAHLIHDLAVEYSPHTRKLLLQFPLHNQLSPTSSPSIKNSTTDSYFGNREFDSNAIMILAVLLCALICSLGLNSIIRCGLRFSNIVINDYSGTNNNSPSPRLANKGIKKKALKKFPIVNYTPELKLKLPGLDTECVICLSEFTDGEKVRVLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLLETKKVVGSSQVQPQQQLEAVLPVPEIVIRIEPLAPEGVERSYR* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0623 231 SMART ring_2 142 183 IPR001841 -
Lja4g0623 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 188 IPR013083 -
Lja4g0623 231 PANTHER RING-H2 FINGER PROTEIN ATL78 1 231 IPR044602 GO:0016567|GO:0016740
Lja4g0623 231 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 231 - -
Lja4g0623 231 SUPERFAMILY RING/U-box 136 190 - -
Lja4g0623 231 Pfam Ring finger domain 141 184 IPR001841 -
Lja4g0623 231 Coils Coil 226 231 - -
Lja4g0623 231 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Lja4g0623 231 CDD RING-H2_PA-TM-RING 141 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0623 Lja-Chr4 5158433 5159340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0623 40 188 C3H Transcription Factor Family AT3G10910 51.634 5.43e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0623 K19040 - gmx:100780127 275.018