Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0622 ATGGATGCTTCAACTTCCTTCACCCATGACCTTGTTGTGGAATACTCCCCCCATACAAGAAAGCTACTCCTTCAATTTCCACTTCACAATCAATTATCACCCACTTCCTCACCTTCCATCAAGAACTCAACAACAGATTCATACTTCGGAAACAGCGAATTCGATTCAAACGCTATCATGATACTAGCTGTCATATTGTGTGCTCTCATCTGCTCACTGGGGTTGAACTCCATCATCAGGTGTGGGTTGAGATTCTCCAGCATAGTCATCAACGATTATAGCGAGACCAACAACAATAGTGCTTCACCTCAATTGGCCAATAAAGGGATCAAGAAAAAAGCTCTTAAGAAATTCCCAACAGTAAACTATACAGCAGAGCTGAAACTACCTGGTTTGGATACAGAGTGTGTGATATGCCTCTCTGAGTTCACCAACGGAGAGAAGGTGCGTGTTTTGCCGAAATGCAACCATGGTTTTCACGCTTCGCTGGCACGGTCTTATTGTCGGTGTTGTCACACCGCACTCATCACCTCTATTGTTGGCATTGCAACACGACCTTTGCCGCCATCACCGCTGCTATCACCTCCCTCGCTGCCATATCTATGCAAGGTTCTTCTTCCCCATTACAGGAAGATCAACAACGGGCACTGTCAATGGGGTCCCACTCTTCCTCCCCGAAATTGTTCCACTTCTTCTTCTTCTTCTTCACTCTTTAGATTTCGTGTCAACTCAGAACACAGCGAAAGATTACACACAAACGAACCTCTCTTCCTCTCTAAATCTTGTTTCACTCGCCATTCAACACTTCCCCCACATCACACGATAAGAGCGGAATCCTTAGATCATGGTCACATGGCTGAGGTGCTTAAAGCTGGAGGATTCTTTCCTATCAGAAAGTCACATGATGCTGCTGTCGGTGCGCTTGTACATATGCTGAAGAAAGCACCACCTCTCCATCAAGATTTCTCCACTTCAGAACATTCTTCACTTCAGGAAGGGCTTCACCAAACTGCTACTCCTAATTCAAGAGTTAGCGTCACAACTACGCCAGTGAAGTTAGCCAATCAACAACCAAAAAAAGAACACTCGTCACACGGCAGCCGCGAAACCTTAAACAGCAATACTCTAGAGCCCAATCAAATCCTAGAGGAACCAAGACCAGTGAGTATAAAGTCTACTGGGATAACAGCAACTAGGAAAACAGCAAGTGATGCATTGGAAGAGTTCCATGGTTACAAAAAAATGAAAAACTTGTTACTCAAGCAAGGTAGTATGCCTCAACTATAG 1287 0.4468 MDASTSFTHDLVVEYSPHTRKLLLQFPLHNQLSPTSSPSIKNSTTDSYFGNSEFDSNAIMILAVILCALICSLGLNSIIRCGLRFSSIVINDYSETNNNSASPQLANKGIKKKALKKFPTVNYTAELKLPGLDTECVICLSEFTNGEKVRVLPKCNHGFHASLARSYCRCCHTALITSIVGIATRPLPPSPLLSPPSLPYLCKVLLPHYRKINNGHCQWGPTLPPRNCSTSSSSSSLFRFRVNSEHSERLHTNEPLFLSKSCFTRHSTLPPHHTIRAESLDHGHMAEVLKAGGFFPIRKSHDAAVGALVHMLKKAPPLHQDFSTSEHSSLQEGLHQTATPNSRVSVTTTPVKLANQQPKKEHSSHGSRETLNSNTLEPNQILEEPRPVSIKSTGITATRKTASDALEEFHGYKKMKNLLLKQGSMPQL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0622 428 MobiDBLite consensus disorder prediction 319 398 - -
Lja4g0622 428 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 163 - -
Lja4g0622 428 MobiDBLite consensus disorder prediction 321 357 - -
Lja4g0622 428 PANTHER RING-H2 FINGER PROTEIN ATL78 1 163 IPR044602 GO:0016567|GO:0016740
Lja4g0622 428 Pfam RING-like zinc finger 135 161 IPR001841 -
Lja4g0622 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 177 IPR013083 -
Lja4g0622 428 SUPERFAMILY RING/U-box 114 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0622 Lja-Chr4 5147340 5156465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0622 36 176 C3H Transcription Factor Family AT3G10910 43.046 8.13e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0622 K19040 - gmx:100527126 196.052