Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0621 ATGAATGTGATGGATTATGAACAATTTGATTGCTCATTTACCCCTTCCTTCATGAATCAACTCCATGAGTGTACCTTAGAAAATGTAAATGCAAATGCATTTCCTATCCAAGAAGATGATCTCTTATCTCCAAATTCCATCTTAGATGAAATGTTTGATCATGATCAATCAGAAAATCTGTCACCTCCAAATACCATTCTGGATGAAATATTTGATCAACAGTCCATGGAAGAGTTGCTGCAGCAACATAACCAGGACTTTGATGTCATGAATCTTGATCTAGGGAATGAGTTATGTCATGGAGTTAGTCAGATAACCCAGAAGAATGTGCATGTTTCAAAGGAAGCTGATAAAGATTCATATTTGAATGGAATTCAAGCAGAGCTAATGGAAGAGACTAGTTTAGTTGATCTCTTGCTGACAGCAGCTGAAGCTGTTGAAGCACAGAACTGGTATCTTGCTTCAGAGATAATTGAGAAACTAACCAATGATGCCTCATCTTTACAAAATGGAGATAGTTTATTGAACAGGTTGGCTCTTTTCTTTGCACAGGGCCTGTTTGATAAAAGTTCATCTCCAACTCCTAAATTACAGTACTACTGTGATCCTGTTTCTACACAGACAGACACTTTCTGTGTGTTGCAGATACTTCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTCACAGCCAACCAAGCAATCCTTGAAGCTACAGACGGTGTTGAAGACGTTCACATCATTGATTTTGACATCATGGAAGGGATCCAATGGCCACCATTGATGGTTGACCTTGCAATGAGGAAGAGCACTAGTACTACTTCACTCAGAGTAACAGCAATCACAGTGGACCAGCAAAGTGCTGCCTCTGCTCATCAAACAGGTAGAAGGCTCGAAGAGTTCGCGGCTTCGATCAATTTCCCATTCACTTTCAATCAGGTAATGATGGTGAGTGAAGAAGATCTTCAAAGAATTGAACTTGGTCACTCCCTCATAGTCAATTGCATGATACACCAGTGGATGCCAAACAGGAGTTTCTCATTGGTCAAAACATTTCTTGATGGTGTGACCAAGTTATCTCCCAAGCTTGTTGTTTTAGTTGAGGAAGAGCTTTTTAATTTTTCTAAACTCAAATCCATGTCATTTGTGGAGTTTTTCTGTGAGGCTTTGCATCACTACACTGCAATTTCTGATTCACTTGCTAGTGGTATGTGGGGTAGCCATAAGGTGGAGTTTGCCCTGATAGAAAAACAGGTTCTGGGGCTTAGAATTTTGGACAGTGTGAGGCAGTTCCCTTGTGAAAGAGAGGAGAGAATGTTGTGGGAAGAAGGGTTGTTTTCATTGAAAGGGTTTAAACGTGTTGGTGTGAGTAGCTCTAATATCTCTCAAGCTAAGTTCTTGGTGAGCCTGTTTGGGAAAGGGTATTGGGTGCAATTTGAGAAGTGTAGGTTGGCTTTGTGTTGGAAGTCAAGGCCTTTGACTGTGGCTTCAATCTGGGTACCAATGACTAATCTGAGTGACAAGGTCAAATAG 1533 0.4051 MNVMDYEQFDCSFTPSFMNQLHECTLENVNANAFPIQEDDLLSPNSILDEMFDHDQSENLSPPNTILDEIFDQQSMEELLQQHNQDFDVMNLDLGNELCHGVSQITQKNVHVSKEADKDSYLNGIQAELMEETSLVDLLLTAAEAVEAQNWYLASEIIEKLTNDASSLQNGDSLLNRLALFFAQGLFDKSSSPTPKLQYYCDPVSTQTDTFCVLQILQELSPYVKFAHFTANQAILEATDGVEDVHIIDFDIMEGIQWPPLMVDLAMRKSTSTTSLRVTAITVDQQSAASAHQTGRRLEEFAASINFPFTFNQVMMVSEEDLQRIELGHSLIVNCMIHQWMPNRSFSLVKTFLDGVTKLSPKLVVLVEEELFNFSKLKSMSFVEFFCEALHHYTAISDSLASGMWGSHKVEFALIEKQVLGLRILDSVRQFPCEREERMLWEEGLFSLKGFKRVGVSSSNISQAKFLVSLFGKGYWVQFEKCRLALCWKSRPLTVASIWVPMTNLSDKVK* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0621 510 Pfam GRAS domain family 135 499 IPR005202 -
Lja4g0621 510 ProSiteProfiles GRAS family profile. 126 500 IPR005202 -
Lja4g0621 510 PANTHER OS12G0162700 PROTEIN 6 501 - -
Lja4g0621 510 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 501 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0621 Lja-Chr4 5141027 5142750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0621 135 499 GRAS Transcription Factor Family AT5G41920 34.309 3.57e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja4g0621 GRAS 8.2e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0621 - - lja:Lj0g3v0198459.1 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0621 4 5141027 5142750 Lja4g0621 4 5141027 5142750 ECH