Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0618 ATGAGTTTAGCCGGTACAGAAAGCTCAGAAGAAGGTCCAGTGCATCAGGAGCCACCTGATCCTGATGTTCTTGAGATTGATCCAACTAGTCGCTACATTAAGTATAAAGAAGTGATCGGCAAAGGAGCCTTCAAAACAGTTTACAAGGCATTTGATGAAGTCAATGGGATTGAAGTTGCTTGGAGCCAGGTTCAGATTGATGAGGTGTTACAGTCGCCGGGCGACTTGGAGAGGCTGTACTCGGAAGTGCATCTCTTGAAATCACTGAGGCACAATAATGTAATCAGATTCTACAATTCCTGGATTGATGACAAGCGCAAGACCGTTAATATGATTACCGAGTTGTTTACCTCGGGTAGCCTCAAACAGTATCGTAAGAAACACAAGAAGGTTGACATGAAGGCTGTTAAAGGATGGGCAAGGCAGATTTTAACTGGTTTGAGCTATCTCCATAGCCACAACCCACCAATTATACATAGGGACCTGAAATGTGATAATATATTTATCAACGGCCACCAAGGAGAAGTTAAGATCGGAGATTTGGGGCTTGCGACTTTCTTGGAACGGGCTAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCACCTGAGTTGTATGATGAAAGTTACAATGAATTAGCCGACATATATTCATTTGGTATGTGCATGCTTGAGTTAGTGACTTCTGAGTATCCTTACAGTGAATGTAGAAACTCAGCACAGATATACAAGAAAGTTTCATCTGGAATAAAACCGGTTGCTCTTACTAAAGTGATGGATCCAGAAATGAAATCATTTATTGAAAAATGTATTGTTCCAGCATCTCAAAGAATGTCTGCACAAGAGCTTCTAATGGACCCTTTTCTCCAAGTGAGCGGTTCAACAAAGAATTTTCCTTTTCCATTGCCAGATATCGTTCTCCCCAAATTGGGAGCCTTTGAGAGTCGATGTATGATGTCAGAAGGTCCTGCCAGTGCACGTAATGTCGACGCCGGTGACACCAATGAGCTACCAGTGATCACTATATCTGATAATTCTACTGATGGTACATTGGGTTCTCCATGTGTTGAGATGAGAAGGTTGAAGGGAGGAAACATCTTCTTTTTCAAAGGTGAAAAAAGTGACGAGAACTCCGTTTCTTTGGTTTTGCGGATAGCAGATCAGACTGGACGAGCGAGAAATATCCATTTCATATTCTACCTTGACAGTGATACTGCTGTTTCAGTTTCAAGTGAAATGGTTGAGCAACTTGAACTTGCTAATCAAAATGTTAAGTTCATTGCTGAATCAATTGATGTGTTATTGAAGAATTTGCTTCCAGATTGGAAGCCTTGTGTAGCAATTGATCATCTGGTTTCCCCACATGGTATACTGACTCAAGCTAATCTGCAGAGAGAAACTGTGGCGGAAGATGCAGTTCCCTCAGCATTGTGTGGAAGATCAGAGCCTGTAAATGAAAACCTTGATAATGCGGATATGTGTTCTGAGATGTCATATGCTTCTGCATCATCAGACTTCAATGATAATAAGCTTTCAGTAGCTTCATTCATGTCTGCTGAATCAGGATTTGATAGAGGTAGTCAATCCTCATTTGAATCTGAAATTGGGGCATCGCCACATGATTATGACGACAAGTTTTCAGACCCGGGAAACAATGACATGATGAGCTTCTCTAGTTATCCCGTTAGTGTTTCCTCCTTGTCTGAACCTGAAGATGAGTTGAGAATAGAGTTAGAAGTGATTGAACAAAAGTATCAAGAGGCATTGAAAATTTTATCTGAAAGCAAAAACCAAGCCATCATGGAGATTAAAAGGAGAATGTTAGGGAAGATGGTATCATAG 1845 0.4114 MSLAGTESSEEGPVHQEPPDPDVLEIDPTSRYIKYKEVIGKGAFKTVYKAFDEVNGIEVAWSQVQIDEVLQSPGDLERLYSEVHLLKSLRHNNVIRFYNSWIDDKRKTVNMITELFTSGSLKQYRKKHKKVDMKAVKGWARQILTGLSYLHSHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATFLERANAKSVIGTPEFMAPELYDESYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALTKVMDPEMKSFIEKCIVPASQRMSAQELLMDPFLQVSGSTKNFPFPLPDIVLPKLGAFESRCMMSEGPASARNVDAGDTNELPVITISDNSTDGTLGSPCVEMRRLKGGNIFFFKGEKSDENSVSLVLRIADQTGRARNIHFIFYLDSDTAVSVSSEMVEQLELANQNVKFIAESIDVLLKNLLPDWKPCVAIDHLVSPHGILTQANLQRETVAEDAVPSALCGRSEPVNENLDNADMCSEMSYASASSDFNDNKLSVASFMSAESGFDRGSQSSFESEIGASPHDYDDKFSDPGNNDMMSFSSYPVSVSSLSEPEDELRIELEVIEQKYQEALKILSESKNQAIMEIKRRMLGKMVS* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0618 614 CDD STKc_WNK 31 290 - -
Lja4g0618 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 491 612 - -
Lja4g0618 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 467 - -
Lja4g0618 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Lja4g0618 614 Gene3D - 378 459 - -
Lja4g0618 614 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0618 614 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0618 614 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Lja4g0618 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 4 467 - -
Lja4g0618 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 491 612 - -
Lja4g0618 614 MobiDBLite consensus disorder prediction 1 26 - -
Lja4g0618 614 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Lja4g0618 614 Coils Coil 572 599 - -
Lja4g0618 614 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0618 614 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 380 435 IPR024678 GO:0004674|GO:0005524
Lja4g0618 614 SUPERFAMILY Protein kinase-like (PK-like) 35 326 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0618 Lja-Chr4 5121033 5123686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0618 133 456 MAP Kinase Kinase Kinase AT1G49160 69.512 5.08e-169 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lja4g0618 Pkinase 7.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0618 K08867 - gmx:121175054 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0618 4 5121033 5123686 Lja4g0618 4 5121033 5123686 ECH