Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0615 ATGGTTAGAGACGATCTATACATCACGGCTCCCAGCTTATTCCGGTGTCCTATATCACTCGACGTCATGAAATCCCCGGTAAGCCTCTGCACCGGAGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTCGACAACGGCCACAACACCTGCCCGGCCACCATGCAAGTCCTCCACAGCAAGGAAATCGTCCCCAACCGCACCTTGCACAGGCTCATCCAGATCTGGGCTGACTCGGTCCGTCACCGAGTCGACTCACCCGAGTCCCCAACCTCCACCGAGTCCGTCCTCTCCAGAAACCAGGTCCTCTCCGCCATCACCGAGTTCAAGACCGGCGAACAAACTCGCCTCGACTCGCTTGCTGAAATCGTGCGTTACGCCAAAGATTCCGAACAGAATCGCGATTTCCTCGCCGGAACAGAAGGTTTCGCGCCGGTGCTGGTCAGTTTCCTCGTCAATGACAATGGCGGAGTGCAACGGAACGTGGAGTTTCTCGAATTGGTTGTTCAGGCGTTGGATTTGATTCTCAGTAAGAAGGAGAAAAGTGAGGAGTTGAGAAACTCGGTGCTGCAGAGCCAGAGCATAGACTCGGTGCTTCTCGTTCTGCAAAAAGGAAGCTCTGATTCCAAAATCGCATCGGCTAGGGTTTTCACATCCATCGCAGTGGACGCTGAATCGAAGCTGTTGATAGCGGCAAAGGAAGGCGTAGTATCGGAATTGCTCAAACTGATTACGCCGGAGAACGATCTGAACCTAATCGAGAGCGCTCTGTCGTGCTTAATCGCAATCTCGACGCCGAAGAGGAACAAGGTGAGGCTAATCCACCTCGGAGGTGTGAAGGCGCTGTCAAGCCTCCTCTCAGCGTCGAATTTGAGCGTGTCATCGGCGGAGAAGGTGCTGAAGCTTCTGGAAACGGTGTCGTCGACGAGGGAAGGGAGGGCCGAGATATGCGAGGATGCGCTATGCGTGGCGGCGATAGTGAACAAGGTTTTGAAGGTGTCGACGGTTGCGACGGAGCACGCGGTGACGACGCTGTGGAGTGTGTGTTATCTGTTCCGGGATCAGAAGGCGCAAGAAGCGGTTACGAAGGCGAATGGTTTGACGAAGATTCTGCTTCTGATGCAGAGCAATTGCTCACCGCAAGTTCGACAAATGTCTGTGGATTTGCTTAAGATCTTCAGGGTTAATTCTAAGTCATGCCTTTCTTCTTATGATACCAAAACTACACATATTATGCCCTTTTGA 1245 0.5309 MVRDDLYITAPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGHNTCPATMQVLHSKEIVPNRTLHRLIQIWADSVRHRVDSPESPTSTESVLSRNQVLSAITEFKTGEQTRLDSLAEIVRYAKDSEQNRDFLAGTEGFAPVLVSFLVNDNGGVQRNVEFLELVVQALDLILSKKEKSEELRNSVLQSQSIDSVLLVLQKGSSDSKIASARVFTSIAVDAESKLLIAAKEGVVSELLKLITPENDLNLIESALSCLIAISTPKRNKVRLIHLGGVKALSSLLSASNLSVSSAEKVLKLLETVSSTREGRAEICEDALCVAAIVNKVLKVSTVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0615 414 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lja4g0615 414 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 278 IPR000225 GO:0005515
Lja4g0615 414 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lja4g0615 414 Gene3D - 292 393 IPR011989 -
Lja4g0615 414 SUPERFAMILY RING/U-box 5 79 - -
Lja4g0615 414 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lja4g0615 414 Gene3D - 98 291 IPR011989 -
Lja4g0615 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 83 IPR013083 -
Lja4g0615 414 PANTHER WDSAM1 PROTEIN 4 414 IPR045185 GO:0061630
Lja4g0615 414 Pfam U-box domain 11 78 IPR003613 GO:0004842|GO:0016567
Lja4g0615 414 SUPERFAMILY ARM repeat 115 396 IPR016024 -
Lja4g0615 414 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0615 Lja-Chr4 5089047 5090566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0615 1 414 U-box Gene Family AT5G64660 53.118 4.33e-143 412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0615 4 5089047 5090566 Lja4g0615 4 5089047 5090566 ECH