Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0611 ATGTCCCCTCTCCTCCCCCTCTCTTTTCTCCTCCTCATCCTCACCCTCTCCTCCGCCTCCCACAGCCACAACAACCACCACCACCATTCCCCCACCCCCTCCCTCCCCGACGCCACCGCCGCGCCAGAAATCCAGCAAGCCTGCAAGGCCACCCGCTTCCCCCAGCAATGCGAATCCTCCCTCTCCCACCTCCCTCCTAACCCAACCTCTCTCCAGCTCCTCCAATCCGCCATCTCCGCCACCTCCACCAACCTCGCCACCGCCCAATCCATGGTCAAGTCCATCCTCGACTCCGCCTCCGGCAGCCGCAACCGCTCCGTCGCCGCCACCACCTGCCTCGAGGTCCTCGCCAACTCCCAGCACCGCATTTCCCTCGCCAACGACTCCCTACCTCACGGCAAGAACAAAGACGCCCGAGCCTGGCTGAGCGCCGCCCTCGCCTACCAATACGACTGCCGGAACGGCCTCAGCTACGCCAACGACTCCCGCTCCGTCGGGGAAGCCATGTCATTCATCGACTCCGTCTCCATTCTCGCCAGCAACGCCCTCACCATGACCTTCGCCTACGACGTCTTCGGAAACGACACCGCGTCGTGGAAGCCACCAGCAACCGAGCGGAACGGATTCTGGGAGAACGGCTCCGGCGCCGGCTCCGGCCACGTCACCGACGGAGATTTCCCGACGAAGGAGAGCGCGGACGTGACGGTGTGTAAGGGAGGGTGCAGTTACAAGACGGTGCAGGAGGCGGTTAACGCCGCGCCGGATAACGGCGTTGAGGGGAAGAGGTTTGTGATATACATTAAAGAAGGGGTTTATGAAGAGACCGTTAGGGTTCCGTTAGAGAAACGGAATGTGGTGTTCTTGGGAGATGGCATGGGGAAGACGGTAATCACCGGCTCTGCAAATGTGGGACAGCCGGGGATGACGACTTACAACTCAGCCACCGTCGCTGTTCTTGGCGATGGATTCAGGGCAAAGGATCTCACAATCCAAAACACAGCAGGTCCTGATGCTCACCAAGCAGTGGCCTTTAGATTAGACAGTGATCTTTCTGTGATTGAGAATTGTGAATTCTTAGGCAATCAAGACACCCTCTATGCTCACTCCCTGCGCCAATTCTACAAATCATGCCGCATTGAGGGCAACGTGGACTTCATCTTCGGAAACTCTGCTTCAATTTTCCAGGACTGCCAAATCCTGGTTCGTCCCCGGCAACTCAAGCCGGAGAAAGGCGAGAACAATGCGGTCACGGCACATGGCAGAACAGACCCTGCACAGGCCACAGGCTTTGTTTTCCAGAACTGCTTGATCAATGGCACTGAGGATTACATGGCATTGTACCACAGCAACCCAAAAGTGCACAAGAACTACTTGGGCAGGCCATGGAAGGAGTACTCTAGGACAGTTTTTATTCATTCATTGTTGGAAGCTCTAGTCACTCCTCAGGGTTGGATGCCATGGAATGGTGAGTTTGCCCTCAAGACACTTTATTATGGGGAGTTTGAGAATTCTGGACCAGGTTCTGATTTGTCTCTGAGGGTTTCCTGGAGTAGCAAGGTCCCTGCTGAGCATGTGTTGACATATTCAGCGGAGAATTTCATTCAAGGTGATGATTGGATTCCATCATCTCAGTTATCAAAGCATCATCGCCGCAAGGGTCATCGTCATGGAACCGGTAGAACAAGACATCAGTAA 1695 0.5575 MSPLLPLSFLLLILTLSSASHSHNNHHHHSPTPSLPDATAAPEIQQACKATRFPQQCESSLSHLPPNPTSLQLLQSAISATSTNLATAQSMVKSILDSASGSRNRSVAATTCLEVLANSQHRISLANDSLPHGKNKDARAWLSAALAYQYDCRNGLSYANDSRSVGEAMSFIDSVSILASNALTMTFAYDVFGNDTASWKPPATERNGFWENGSGAGSGHVTDGDFPTKESADVTVCKGGCSYKTVQEAVNAAPDNGVEGKRFVIYIKEGVYEETVRVPLEKRNVVFLGDGMGKTVITGSANVGQPGMTTYNSATVAVLGDGFRAKDLTIQNTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNSASIFQDCQILVRPRQLKPEKGENNAVTAHGRTDPAQATGFVFQNCLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALKTLYYGEFENSGPGSDLSLRVSWSSKVPAEHVLTYSAENFIQGDDWIPSSQLSKHHRRKGHRHGTGRTRHQ* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0611 564 PANTHER PECTINESTERASE 10 543 - -
Lja4g0611 564 Pfam Pectinesterase 233 537 IPR000070 GO:0030599|GO:0042545
Lja4g0611 564 PANTHER PECTINESTERASE 10 543 - -
Lja4g0611 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 186 IPR035513 -
Lja4g0611 564 MobiDBLite consensus disorder prediction 544 564 - -
Lja4g0611 564 CDD PMEI-like_3 47 185 - -
Lja4g0611 564 Gene3D - 231 550 IPR012334 -
Lja4g0611 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 183 IPR006501 GO:0004857
Lja4g0611 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 187 IPR035513 -
Lja4g0611 564 SUPERFAMILY Pectin lyase-like 231 543 IPR011050 -
Lja4g0611 564 Pfam Plant invertase/pectin methylesterase inhibitor 44 185 IPR006501 GO:0004857
Lja4g0611 564 SMART PMEI_2 39 185 IPR006501 GO:0004857
Lja4g0611 564 MobiDBLite consensus disorder prediction 546 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0611 Lja-Chr4 5056418 5059424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0611 32 539 Carbohydrate Esterase AT5G09760 65.116 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0611 - - adu:107480269 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0611 4 5056418 5059424 Lja4g0611 4 5056418 5059424 ECH
Lja4g0611 4 5056418 5059424 Lja1g4521 1 58946492 58948727 PCT